Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2349 105 5e-18 seq80 98.7 7e-16 seq7 98.7 7e-16 seq2397 89.7 3e-13 >seq2349 Length=20186 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || || || ||||| || || || || || | || || |||| | | ||||| Sbjct 7672 ACCGGCAAGACCATCACACTGGATGTGGAGGCCTCTGATACCATTGAGAACGTGAAACAG 7613 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 ||||| || || ||||| | || || ||||| ||||| || ||||| || || ||| Sbjct 7612 AAAATCCAGGATAAGGAAGGCATCCCTCCGGATCAGCAGCGATTGATATTCGCTGGTAAA 7553 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||| ||||||| | || ||||| |||||| ||||| || |||||||||||||| || Sbjct 7552 CAATTGGAAGATGGGCGTACTTTGTCCGATTATAACATCCAGAAAGAGTCCACATTGCAC 7493 Query 23815 TTAGTTTTAAGGTTGCGAGGAGG 23837 || || | | |||||||||| Sbjct 7492 TTGGTGCTCCGTCTGCGAGGAGG 7470 >seq80 Length=198448 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23623 GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAA 23682 || || ||||| || || || || ||||| | || || || || |||| || |||| Sbjct 77217 GTCAAGACCCTTACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAG 77158 Query 23683 ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATA 23742 | | ||||| ||||| ||||||||||| | || || ||||| ||||| || || Sbjct 77157 AATGTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAGCGATTGATT 77098 Query 23743 TTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAG 23802 ||||| || |||||| |||| || | ||| ||| || |||||||| || || || || Sbjct 77097 TTTGCTGGAAAACAATTGGAGGATGGACGTACTCTATCTGATTACAATATCCAGAAGGAA 77038 Query 23803 TCCACATTACATTTAGT 23819 || || | |||||||| Sbjct 77037 TCTACTCTGCATTTAGT 77021 >seq7 Length=130303 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23629 ACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTA 23688 || ||||| || ||||| ||||| ||||| || || || | |||||| | || | | Sbjct 35703 ACTCTCACTGGTAAAACCATCACCCTCGATGTGGAAGCCTCCGACACTATCGAGAACGTG 35762 Query 23689 AAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCC 23748 || || ||||| ||||||||||| | ||||| ||||| || | | || || || Sbjct 35763 AAGCAGAAAATCCAGGACAAAGAAGGCATCCCGCCTGATCAGCAAAGGCTCATTTTCGCA 35822 Query 23749 GGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACA 23808 || || || |||||||||| |||||| | ||| |||||||| || || || || || Sbjct 35823 GGGAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCAACC 35882 Query 23809 TTACATTTAGTTTT 23822 || ||||| || || Sbjct 35883 TTGCATTTGGTCTT 35896 >seq2397 Length=4497 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23623 GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAA 23682 || || ||||| || || || || ||||| | || || || || |||| || |||| Sbjct 1788 GTCAAGACCCTTACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAG 1847 Query 23683 ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATA 23742 | | ||||| ||||| ||||||||||| | || || ||||| ||||| || || Sbjct 1848 AATGTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGCAGCGATTGATT 1907 Query 23743 TTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAG 23802 ||||| || || ||| |||| || | ||| ||| | |||||||| || || || || Sbjct 1908 TTTGCTGGAAAGCAATTGGAGGATGGACGTACTCTGTCTGATTACAATATCCAGAAGGAA 1967 Query 23803 TCCACATTACATTTAGT 23819 || || | |||||||| Sbjct 1968 TCTACTCTGCATTTAGT 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337976405133464