Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq250 140 8e-28 seq2397 132 1e-25 seq7 125 2e-23 seq80 123 6e-23 >seq250 Length=105897 Score = 140 bits (154), Expect = 8e-28 Identities = 134/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||| || |||| |||||| |||| | ||| | ||||| || | |||| Sbjct 9448 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATCCTCCAACTGC 9507 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | ||| || || || || ||||| ||||||||||| ||||| || Sbjct 9508 TTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGGATTTTC 9567 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682 ||||| ||| |||||||||||| || | |||||| || | ||||| |||| Sbjct 9568 TGCTTGACATTTTCGATGGTGTCAGAAGCTTCCACATCCAGAGTGATGGTCT 9619 >seq2397 Length=4497 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | || ||||| ||||| || |||| ||||||||| | || ||| Sbjct 1997 ACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGACAGAGT 1938 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | ||||| ||||| || || | ||| || || || || ||||| || Sbjct 1937 ACGTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGAATGCC 1878 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||| || || |||||| || ||||| || |||| |||||| || || Sbjct 1877 TTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAA 1818 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 1817 GGTGATGGTCTTACCAGT 1800 >seq7 Length=130303 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||| | || | || ||||| || |||| ||||| |||| | ||| Sbjct 35906 ACGAAGACGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGT 35847 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| ||||||||||| ||||| || || | ||| || || ||||| || || Sbjct 35846 GCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCC 35787 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| ||||| || |||||||| ||||| ||||| |||| |||||| || | Sbjct 35786 TTCTTTGTCCTGGATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACATCGAG 35727 Query 225672 CGTGATCGTCTTGCCCGTCAAAGT 225695 ||||| || || || || | ||| Sbjct 35726 GGTGATGGTTTTACCAGTGAGAGT 35703 >seq80 Length=198448 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | || ||||| ||||| || |||| ||||||||| | | ||| Sbjct 77008 ACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGAGT 77067 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | || || ||||| || || | ||| || || || || ||||| || Sbjct 77068 ACGTCCATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATGCC 77127 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||| || || |||||| || ||||| || |||| |||||| || || Sbjct 77128 TTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACATCCAA 77187 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 77188 GGTGATGGTCTTACCAGT 77205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192408079352252