Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 156 6e-33 seq1217 93.3 6e-14 >seq5 Length=391144 Score = 156 bits (172), Expect = 6e-33 Identities = 296/433 (68%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || ||||| ||||||||||| || ||||| || || ||| ||||| ||||| || | Sbjct 174509 AAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAG 174568 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 ||||| ||||| ||||| | ||||| | |||||| |||| ||| || || || || Sbjct 174569 AGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGAGCAGAATGAACCCGAGAAA 174628 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTGGCTT---CGT 48312 || || ||||| || || |||||||| ||| ||| || | || ||| | | Sbjct 174629 AAGATTCCTTCAACAGCAGCAAATGCAATAA--CTCGTTCAGGAAAGGAGGCATAAGCCG 174686 Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 | | |||| | | ||||| || |||||| || ||||| || || |||| || | Sbjct 174687 GATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATTG 174746 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 | || || || || ||| || || ||||||||| |||||| || || | || || Sbjct 174747 CGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAAT 174806 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 | | ||| || || || ||||| | || || || || ||||| ||||| | ||||| | Sbjct 174807 AGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCAG 174866 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 | ||||| || | ||| |||||| | |||||| || || || ||||| || | Sbjct 174867 GCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTTG 174926 Query 48553 CAGCAAAAAATGC 48565 ||||||| || || Sbjct 174927 CAGCAAAGAAAGC 174939 >seq1217 Length=25202 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 77664 ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT---AGCGTTG 77720 |||||||| |||| || || || ||||| || |||||| ||||| |||| || Sbjct 14851 ACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGTG 14910 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 || | || || |||||||| | || || ||||| || || ||||||||||| Sbjct 14911 ---TACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTGA 14967 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 ||||| || |||||| || ||||| || || ||| ||||||| || |||||||| || Sbjct 14968 TTGCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTTGA 15027 Query 77841 GATTCGATAATAG 77853 || || | |||| Sbjct 15028 GAATCCAGTATAG 15040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694598829485120