Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 156 6e-33 seq1217 84.2 3e-11 >seq5 Length=391144 Score = 156 bits (172), Expect = 6e-33 Identities = 296/433 (68%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || ||||| ||||||||||| || ||||| || || ||| ||||| ||||| || | Sbjct 174509 AAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAG 174568 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || |||||||| ||||| | |||||| | |||||| || | ||| || || || || Sbjct 174569 AGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTGAGCAGAATGAACCCGAGAAA 174628 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCAT---CAT 46801 || || ||||| ||||| || ||||| | || ||| || | || ||||| | Sbjct 174629 AAGATTCCTTCAACAGCAGCAAATGCAATAA--CTCGTTCAGGAAAGGAGGCATAAGCCG 174686 Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 || |||| | ||||| || ||||| || ||||| || || |||| || | Sbjct 174687 GATCTGTCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGATTG 174746 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 | || || || || ||| || | ||||||||| || || || || | || || Sbjct 174747 CGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGAAT 174806 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 | | ||| ||||| |||||||| | ||| || || || ||||| ||||| | ||||||| Sbjct 174807 AGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTCAG 174866 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 | ||||| || | ||| ||||| | |||||| ||||| || ||||| || | Sbjct 174867 GCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCTTG 174926 Query 47042 CAGCAAAAAATGC 47054 ||||||| || || Sbjct 174927 CAGCAAAGAAAGC 174939 >seq1217 Length=25202 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 76258 CACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGC 76317 |||||||||||| || || || || ||||| || || ||| ||||| | | || Sbjct 14850 CACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACTGCTGTCTCATCTGGAGCGGT 14909 Query 76318 ATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTT 76377 || | || || || || || | || |||||||| || |||||||||||||| || Sbjct 14910 GTACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATTGTACCAAGATTTTGTTGATT 14969 Query 76378 GCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 ||| || || || || ||||| || || | | ||||||| || |||||||| || || Sbjct 14970 GCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGAGTGCCTGTTTCAATTTGAGA 15029 Query 76438 TTCGATAATAG 76448 || | |||| Sbjct 15030 ATCCAGTATAG 15040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712862589682560