Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq470 93.3 1e-13 seq263 93.3 1e-13 seq7 93.3 1e-13 seq218 87.8 4e-12 seq3592 86.0 1e-11 seq2100 86.0 1e-11 seq1543 86.0 1e-11 seq826 86.0 1e-11 >seq470 Length=818 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || || || ||||| || | | ||||| |||||||| | Sbjct 579 CAAG-TGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCA 637 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||||| || || || || | ||||| || | | ||||||||||| || || | Sbjct 638 ATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 697 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||||| |||| | |||| || || || || || || || || || | Sbjct 698 TTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCC 757 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| || |||| |||||| Sbjct 758 CAGTCAAAGTCTTGACAAAGATCTGCAT 785 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || || || ||||| || | | ||||| |||||||| | Sbjct 351 CAAG-TGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCA 409 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || || || || || | ||||| || | | ||||||||||| || || Sbjct 410 ATTGCTTTCCC--GCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 467 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||||||||| |||| | |||| || || || || || || || || || Sbjct 468 GATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTT 527 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| || |||| |||||| Sbjct 528 CCCAGTCAAAGTCTTGACAAAGATCTGCAT 557 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || | || ||||| || | | ||||| |||||||| | Sbjct 123 CAAG-TGGAGAGTTGATTCCTTCTRAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCA 181 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || || || || || | ||||| || | | ||||||||||| || || Sbjct 182 ATTGCTTTCCC--GCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 239 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||||||||| |||| | |||| || || || || || || || || || Sbjct 240 GATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTT 299 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| || |||| |||||| Sbjct 300 CCCAGTCAAAGTCTTGACAAAGATCTGCAT 329 >seq263 Length=166476 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | |||||| || || ||||||||||| || | || ||| | ||||| Sbjct 119172 AGTACGAGATGTAAAGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGTCCATCC 119113 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| | | |||||| || | || |||||||||||| | Sbjct 119112 TCGAGCTGCTTT--CCGGCAAAGATTAATCGCTGCTGATCAGGCGGGATTCCTTCCTTAT 119055 Query 152011 CTTGAATTTTTTGTTTGACAGTCT 152034 | || ||||| || || ||| ||| Sbjct 119054 CCTGGATTTTCTGCTTAACATTCT 119031 >seq7 Length=130303 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | || || || || ||||||||||| |||| | ||| | || ||||| Sbjct 35894 GACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTC 35835 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||||| ||||| || ||||| ||||| || | || ||| ||||| || || || Sbjct 35834 CAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGCGGGATGCCTTCTTTGTCCTG 35775 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| || || || |||| | |||| || || || || || || || ||||| Sbjct 35774 GATTTTCTGCTTCACGTTCTCGATAGTGTCGGAGGCTTCCACATCGAGGGTGATGGTTTT 35715 Query 152075 GCCCGTGAGAGTCT 152088 || |||||||||| Sbjct 35714 ACCAGTGAGAGTCT 35701 >seq218 Length=95557 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || || || ||||| || | | ||||| |||||||||| Sbjct 87592 CAAG-TGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCTA 87534 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||||| || || || || | ||||| || | | ||||||||||| || || | Sbjct 87533 ATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 87474 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||||| |||| | |||| || || || || || || || || || | Sbjct 87473 TTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCC 87414 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || || | |||||| Sbjct 87413 CAGTCAATGTCTTGACAAAAATCTGCAT 87386 >seq3592 Length=385 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 || ||||| || || || || || ||||| || | | ||||| |||||||| | || Sbjct 382 TGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGC 323 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| || || || || || | ||||| || | | ||||||||||| || || |||| Sbjct 322 TTTCCC--GCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTT 265 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||||||||| |||| | |||| || || || || | || || || || || | Sbjct 264 TCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACGTCCAAGGTGATGGTCTTCCCAG 205 Query 152080 TGAGAGTCTTCACGAAGACCTGCAT 152104 | | |||||| || |||| |||||| Sbjct 204 TCAAAGTCTTGACAAAGATCTGCAT 180 >seq2100 Length=597 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || || || ||||| || | | ||||| |||||||| | Sbjct 374 CAAG-TGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCA 316 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || || || || || | ||||| || | | ||||||||||| || || Sbjct 315 ATTGCTTTCCC--GCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 258 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||||||||| |||| | |||| || || || || || || || || || Sbjct 257 GATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTT 198 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| || || | |||||| Sbjct 197 CCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTT 151962 ||||| || || || || || ||||| || | | ||||| |||||||| | ||||| Sbjct 595 AGAGTCGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTT 536 Query 151963 TCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTT 152022 || || || || || | ||||| || | | ||||||||||| || || ||||| | Sbjct 535 CCC--GCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCT 478 Query 152023 GTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGA 152082 |||||||| |||| | |||| || || || || || || || || || || || | Sbjct 477 GTTTGACATTCTCAATTGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCA 418 Query 152083 GAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||| |||||| Sbjct 417 ATGTCTTGACAAAGATCTGCAT 396 >seq1543 Length=600 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || || || ||||| || | | ||||| |||||||| | Sbjct 206 CAAG-TGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCA 264 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | ||||| || | | ||||||||||| || || | Sbjct 265 ATTGCTTYCCCGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 324 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||||| |||| | |||| || || || || || || || || || | Sbjct 325 TTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTTCC 384 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || |||| |||||| Sbjct 385 CAGTCAATGTCTTGACAAAGATCTGCAT 412 >seq826 Length=494 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || || || ||||| || | | ||||| |||||||| | Sbjct 210 CAAG-TGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCA 152 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || || || || || | ||||| || | | ||||||||||| || || Sbjct 151 ATTGCTTTCCC--GCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 94 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||||||||| |||| | |||| || || || || || || || || || Sbjct 93 GATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCACATCCAGGGTGATGGTCTT 34 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| || |||| |||||| Sbjct 33 CCCAGTCAATGTCTTGACAAAGATCTGCAT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153701675934918