Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq470 145 2e-29 seq2100 141 2e-28 seq3592 134 3e-26 seq1543 134 3e-26 seq7 132 1e-25 seq80 127 4e-24 seq2397 118 2e-21 seq263 118 2e-21 >seq470 Length=818 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | |||| || | || ||| || || || |||||||||| Sbjct 558 ACCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 617 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | ||| ||||| ||||| |||| |||||| || ||| || Sbjct 618 AAGAGTTCGACCATCTTCCAATTGCTTCCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 677 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || ||||| || ||| || | || || |||||||| ||||| || Sbjct 678 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCAC 737 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||||||||| || || |||||||| Sbjct 738 ATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 785 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | |||| || | || ||| || || || |||||||||| Sbjct 330 ACCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTGAATATTGTAGTCAGA 389 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | ||| || || ||||| |||| |||||| || ||| || Sbjct 390 AAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 449 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || ||||| || ||| || | || || |||||||| ||||| || Sbjct 450 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATTGTGTCCGACGCTTCCAC 509 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||||||||| || || |||||||| Sbjct 510 ATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 557 Score = 138 bits (152), Expect = 2e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | |||| || | || ||| || | || |||||||||| Sbjct 102 ACCACCTCGGAGACGCAAGACCAAGTGGAGAGTTGATTCCTTCTRAATATTGTAGTCAGA 161 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | ||| || || ||||| |||| |||||| || ||| || Sbjct 162 AAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 221 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || ||||| || ||| || | || || |||||||| ||||| || Sbjct 222 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCAC 281 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||||||||| || || |||||||| Sbjct 282 ATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 329 >seq2100 Length=597 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | |||| || | || ||| || || || |||||||||| Sbjct 395 ACCACCTCGGAGACGCAAGACCAAGTGGAGAGTCGATTCCTTCTGAATATTGTAGTCAGA 336 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | ||| || || ||||| |||| |||||| || ||| || Sbjct 335 AAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGTTGCTGATCAGGAGG 276 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || ||||| || ||| || | || || |||||||| ||||| || Sbjct 275 AATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTGTCCGACGCTTCCAC 216 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||||||||| || || |||||||| Sbjct 215 ATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 168 >seq3592 Length=385 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || || || |||||||||| ||| || || ||||| || | ||| || || ||||| Sbjct 371 TTCCTTCTGAATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAA 312 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||| |||||| || ||| ||||| || ||||| || ||||| || ||| || | Sbjct 311 AATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATT 252 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || |||||||| ||||| || || | ||||| ||||| || ||||||||||| || Sbjct 251 CTCAATCGTGTCCGACGCTTCCACGTCCAAGGTGATGGTCTTCCCAGTCAAAGTCTTGAC 192 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 191 AAAGATCTGCAT 180 >seq1543 Length=600 Score = 134 bits (148), Expect = 3e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977 || |||||||||| ||| || || ||||| || | ||| || || ||||| |||| |||| Sbjct 3 ATATTGTAGTCAGAAAGAGTTCGACCATCTTCCAATTGCTTTCCCGCAAAAATCAGACGT 62 Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || || ||| ||||| || ||||| || ||||| || ||| || | || || ||| Sbjct 63 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTCTGTTTGACATTCTCAATCGTG 122 Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||||| ||||| || || || ||||| ||||| || ||||||||||| || || |||||| Sbjct 123 TCCGACGCTTCCACATCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGC 182 Query 283098 AT 283099 || Sbjct 183 AT 184 >seq7 Length=130303 Score = 132 bits (146), Expect = 1e-25 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 282870 GAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA 282929 || |||||||| || || | |||| ||| || || ||| || |||||||||||||| Sbjct 35914 GAGCCACCACGAAGACGCAAGACCAAATGCAAGGTTGATTCCTTCTGGATGTTGTAGTCG 35855 Query 282930 GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCC 282989 | || |||||||| || || || || ||||| || || || | | ||| || ||| | Sbjct 35854 GAGAGAGTGCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATGAGCCTTTGCTGATCAGGC 35795 Query 282990 GGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 || || || || ||||| ||||| || ||||| ||| | ||||||||||| || ||||| Sbjct 35794 GGGATGCCTTCTTTGTCCTGGATTTTCTGCTTC-ACGTTCTCGATAGTGTCGGAGGCTTC 35736 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || ||||| ||||| || ||||| || | ||||| Sbjct 35735 CACATCGAGGGTGATGGTTTTACCAGTGAGAGTCT 35701 >seq80 Length=198448 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || || | ||| | || ||| || ||||| ||||| |||| Sbjct 77003 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAT 77062 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | |||||| || ||||| ||||| || || || ||| ||| Sbjct 77063 AGAGTACGTCCATCCTCCAATTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 77122 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||||||||| || ||| || | || || || ||||| ||||| || Sbjct 77123 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 77182 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | ||||| |||||||| || | ||||| || Sbjct 77183 TCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 77217 >seq2397 Length=4497 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || || | ||| | || ||| || ||||| ||||| |||| Sbjct 2002 CCACCACGGAGGCGCAGCACTAAATGCAGAGTAGATTCCTTCTGGATATTGTAATCAGAC 1943 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | ||| || || ||||| ||||| || || || || ||| Sbjct 1942 AGAGTACGTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCGCTGCTGATCCGGAGGA 1883 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||||||||| || ||| || | || || || ||||| ||||| || Sbjct 1882 ATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTCTCAATGGTATCCGAGGCTTCCACA 1823 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | ||||| |||||||| || | ||||| || Sbjct 1822 TCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 1788 >seq263 Length=166476 Score = 118 bits (130), Expect = 2e-21 Identities = 117/150 (78%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| ||||| |||||||| || ||| || |||||||||||||| | Sbjct 119188 ACCACCACGGAGGCGCAGTACGAGATGTAAAGTAGATTCCTTCTGGATGTTGTAGTCCGA 119129 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || ||||||||||| || || || || ||| ||| Sbjct 119128 TAGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATTAATCGCTGCTGATCAGGCGG 119069 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTT 283020 || || ||||| || ||||| || ||||| Sbjct 119068 GATTCCTTCCTTATCCTGGATTTTCTGCTT 119039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046631131373932