Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5 206 3e-48 >seq5 Length=391144 Score = 206 bits (228), Expect = 3e-48 Identities = 327/465 (70%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 || ||||| |||||||||||||| ||||| ||||| ||||||||||||||| || Sbjct 174509 AAGCATGCGAAATCACAATGTAGTCCTTCGTCCCTGGAAATCAATTCATTAGAGAAGCAG 174568 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAA 23624 | || ||||| | ||| | ||||| |||||||| |||| |||| ||||| || || || Sbjct 174569 AGACCAGGCATAAGTCCCCTCTTTTTTATCCAAAAGATTG-AGCAGAATGAACCCGAGAA 174627 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA--- 23681 || || || |||||||| ||||| || | || ||| | ||| | |||| | Sbjct 174628 AAAGATTCCTTCAACAGCAGCAAATGCAATAACTCGTTCAGGAAAGGAGGCATAAGCCGG 174687 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAAT 23741 ||| | |||||| | ||| | |||||| ||| ||||| || |||| || Sbjct 174688 ATCTG---TCCATTGCAGCGCCCAGTCTGCCTTCCGTTTCACACAGGGGATGGTTTGGAT 174744 Query 23742 TGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 ||| || || || ||| |||| |||||| | || || || || || || | Sbjct 174745 TGCGTTGAAAAGGTGGTCTTTCTCTTTCTTATCTTTAATGTAAGTGTCGATGAGGAGTGA 174804 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||| | ||||||||| || ||||| | ||| || || || || || ||||| | |||||| Sbjct 174805 ATAGACTTCAGAATGGATGTTTTCCACAGCGATTTGGAAACCGTAGAAACAGCGAGCTTC 174864 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 || || ||| || || | ||| ||| ||| | ||| ||||| ||||||||||| || Sbjct 174865 AGGCACTTGTACTTCGCTGGCAAAGTTTTCAGCGAGATTCTCGTTCACAATACCATCGCT 174924 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966 ||||||||||||||||| || || | | || || |||||||| Sbjct 174925 TGCAGCAAAGAAAGCAAGGACGTAGCTCAAGAAGTGCCTTTCATC 174969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521435473121200