Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq250 96.9 2e-15 seq2349 95.1 9e-15 seq2397 93.3 3e-14 seq80 89.7 4e-13 >seq7 Length=130303 Score = 104 bits (114), Expect = 2e-17 Identities = 130/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| |||| ||| ||| |||| |||||||||||||| || || Sbjct 35875 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTCCCTGCGAAA 35816 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | | |||||||| | || | ||||| || ||| || ||||||||| | ||| Sbjct 35815 ATGAGCCTTTGCTGATCAGGCGGGATGCCTTCTTTGTCCTGGATTTTCTGCTTC-ACGTT 35757 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCT 44321 | | || ||||||| || |||||| || | || || || || || ||||| |||| Sbjct 35756 CTCGATAGTGTCGGAGGCTTCCACATCGAGGGTGATGGTTTTACCAGTGAGAGTCT 35701 >seq250 Length=105897 Score = 96.9 bits (106), Expect = 2e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| ||| ||||| ||||| ||||| |||| || ||| | || ||| Sbjct 9442 ACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATCCTCC 9501 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || || ||||| ||||||||||| | || | |||||||| ||| Sbjct 9502 AACTGCTTTCCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGG 9561 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || |||||||| | || | |||||||| | | |||||| |||| || || |||| Sbjct 9562 ATTTTCTGCTTGACATTTTCGATGGTGTCAGAAGCTTCCACATCCAGAGTGATGGTCT 9619 >seq2349 Length=20186 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||| | | ||||| ||| | ||| ||| || |||||||| ||||||| Sbjct 7470 CCTCCTCGCAGACGGAGCACCAAGTGCAATGTGGACTCTTTCTGGATGTTATAATCGGAC 7529 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | ||| | || |||| || || || || || ||||| ||||||||||| | ||| Sbjct 7530 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAATATCAATCGCTGCTGATCCGGAGGG 7589 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| || ||||| ||| | |||| | ||||| || | || ||||| Sbjct 7590 ATGCCTTCCTTATCCTGGATTTTCTGTTTC-ACGTTCTCAATGGTATCAGAGGCCTCCAC 7648 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 |||| || || ||||| || || | |||| ||| Sbjct 7649 ATCCAGTGTGATGGTCTTGCCGGTCAAAGTCTGCAC 7684 >seq2397 Length=4497 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| |||||||| | || || | || |||| ||||| || ||||| Sbjct 1966 TCCTTCTGGATATTGTAATCAGACAGAGTACGTCCATCCTCCAATTGCTTTCCAGCAAAA 1907 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| ||||||||||| | ||| | ||||| || || || ||||| |||| | Sbjct 1906 ATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTC 1847 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| || | || |||||| |||| || || ||||| || || |||||||| || Sbjct 1846 TCAATGGTATCCGAGGCTTCCACATCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 1788 >seq80 Length=198448 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| |||||||| | || || | || |||| || || || ||||| Sbjct 77039 TCCTTCTGGATATTGTAATCAGATAGAGTACGTCCATCCTCCAATTGTTTTCCAGCAAAA 77098 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| ||||||||||| | ||| | ||||| || || || ||||| |||| | Sbjct 77099 ATCAATCGCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATTTTCTGTTTCACATTC 77158 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| || | || |||||| |||| || || ||||| || || |||||||| || Sbjct 77159 TCAATGGTATCCGAGGCTTCCACATCCAAGGTGATGGTCTTACCAGTAAGGGTCTTGAC 77217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359955046467786