Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7 167 6e-36 seq2349 143 6e-29 seq2397 131 4e-25 seq80 131 4e-25 seq250 129 1e-24 seq263 107 5e-18 >seq7 Length=130303 Score = 167 bits (184), Expect = 6e-36 Identities = 154/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 |||||||| || ||||| ||||||||||| |||||| ||| ||||| ||||||||||| Sbjct 35703 ACTCTCACTGGTAAAACCATCACCCTCGATGTGGAAGCCTCCGACACTATCGAGAACGTG 35762 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || || || || |||||||||||||| ||||| || || |||||| | || || ||||| Sbjct 35763 AAGCAGAAAATCCAGGACAAAGAAGGCATCCCGCCTGATCAGCAAAGGCTCATTTTCGCA 35822 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| ||||| || | ||||| |||| || ||| |||| || |||||||| Sbjct 35823 GGGAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCAACC 35882 Query 178119 CTGCATCTTGTTTTG 178133 ||||| | || ||| Sbjct 35883 TTGCATTTGGTCTTG 35897 >seq2349 Length=20186 Score = 143 bits (158), Expect = 6e-29 Identities = 150/196 (77%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 ||| | ||| | || || || || ||||| || || ||||| ||| || ||||| ||| Sbjct 7684 GTGCAGACTTTGACCGGCAAGACCATCACACTGGATGTGGAGGCCTCTGATACCATTGAG 7625 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 ||||| ||||| || || ||||| || ||||| ||||||||||| ||||| ||| | || Sbjct 7624 AACGTGAAACAGAAAATCCAGGATAAGGAAGGCATCCCTCCGGATCAGCAGCGATTGATA 7565 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || ||||| | |||||||| | ||| | ||||||||||| |||| ||||| Sbjct 7564 TTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCCGATTATAACATCCAGAAAGAG 7505 Query 178113 TCAACACTGCATCTTG 178128 || ||| |||| |||| Sbjct 7504 TCCACATTGCA-CTTG 7490 >seq2397 Length=4497 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || || || || |||||| | || |||||| ||| || ||||| ||| Sbjct 1788 GTCAAGACCCTTACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAG 1847 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || ||||| || || || ||||||||||| || |||||||| ||||| ||| | || Sbjct 1848 AATGTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGCAGCGATTGATT 1907 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || ||||| || | || |||||| | ||||| | ||||| || |||| || ||| Sbjct 1908 TTTGCTGGAAAGCAATTGGAGGATGGACGTACTCTGTCTGATTACAATATCCAGAAGGAA 1967 Query 178113 TCAACACTGCAT 178124 || || |||||| Sbjct 1968 TCTACTCTGCAT 1979 >seq80 Length=198448 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || || || || |||||| | || |||||| ||| || ||||| ||| Sbjct 77217 GTCAAGACCCTTACTGGTAAGACCATCACCTTGGATGTGGAAGCCTCGGATACCATTGAG 77158 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || ||||| || || || ||||||||||| || ||||| || ||||| ||| | || Sbjct 77157 AATGTGAAACAGAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAGCGATTGATT 77098 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || |||||||| | || |||||| | ||||| | ||||| || |||| || ||| Sbjct 77097 TTTGCTGGAAAACAATTGGAGGATGGACGTACTCTATCTGATTACAATATCCAGAAGGAA 77038 Query 178113 TCAACACTGCAT 178124 || || |||||| Sbjct 77037 TCTACTCTGCAT 77026 >seq250 Length=105897 Score = 129 bits (142), Expect = 1e-24 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || ||||| || || |||||| || ||||||||||| || ||||| || || || ||| Sbjct 9617 ACCATCACTCTGGATGTGGAAGCTTCTGACACCATCGAAAATGTCAAGCAGAAAATCCAG 9558 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||| || || ||||| ||||| ||| | || ||||| ||||| ||| | || Sbjct 9557 GACAAGGAAGGCATTCCACCGGATCAGCAGCGATTGATTTTCGCTGGAAAGCAGTTGGAG 9498 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||| | |||||| |||| || || |||| || ||||| || || ||| Sbjct 9497 GATGGACGCACTCTTTCCGACTACAATATCCAGAAGGAATCCACTCTTCAT 9447 >seq263 Length=166476 Score = 107 bits (118), Expect = 5e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 |||| || || || || || ||||| || ||||||||||| || || ||||| ||| | | Sbjct 119031 AGAATGTTAAGCAGAAAATCCAGGATAAGGAAGGAATCCCGCCTGATCAGCAGCGATTAA 119090 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| |||||||| |||||||| |||||| | ||||| | || || ||| |||| || | Sbjct 119091 TCTTTGCCGGAAAGCAGCTCGAGGATGGACGTACTCTATCGGACTACAACATCCAGAAGG 119150 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || | ||||| || Sbjct 119151 AATCTACTTTACATCTCGT 119169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203606923029252