Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq13161 98.7 7e-16 seq13160 98.7 7e-16 seq13159 98.7 7e-16 >seq13161 Length=3939 Score = 98.7 bits (108), Expect = 7e-16 Identities = 201/298 (67%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 102037 ATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATC 102096 ||||| || || ||||| | ||| ||| | ||||| ||||| |||||||| ||||| || Sbjct 914 ATATTTAGCACCAAAATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTC 973 Query 102097 TCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTG 102156 ||| | || || ||||||||||| || |||| ||||| ||||||| || || Sbjct 974 TCTATGTGTAAGTCCTAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATG 1033 Query 102157 CACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTC 102216 | || || ||| | ||| | |||| | || | |||||| | | || Sbjct 1034 AATACCTTTCTCTTGTAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTC 1093 Query 102217 TTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA---TTCATTTTC 102273 ||| | ||||||||||| ||||| | ||| || || | || ||||| |||||| Sbjct 1094 CTCAGCTACACCTCTCCAGAATACACGCTTTGTTGTAAGTAGAGGAAAGCGTTCATTCCT 1153 Query 102274 TAAACTAAACCTAGACTGTGTTCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCA 102331 |||||| || || || ||||| |||| ||||| || || || ||||| ||| Sbjct 1154 TAAACTGAATCTCATTTGCACACCAAATTTACTGAGTGTACCTGTACCAGTTCTATCA 1211 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 101786 TAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGA 101845 || |||||||| || |||||||| || | |||||||||||| | |||||||| |||| Sbjct 469 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 528 Query 101846 CAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACC 101905 || || | | |||| | ||||| || |||| || | |||||| || ||||| || Sbjct 529 CATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCC 588 Query 101906 ATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCT 101956 |||||| | || || |||||| || ||| || || | ||||||| Sbjct 589 ATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCT 639 >seq13160 Length=3470 Score = 98.7 bits (108), Expect = 7e-16 Identities = 201/298 (67%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 102037 ATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATC 102096 ||||| || || ||||| | ||| ||| | ||||| ||||| |||||||| ||||| || Sbjct 1606 ATATTTAGCACCAAAATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTC 1547 Query 102097 TCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTG 102156 ||| | || || ||||||||||| || |||| ||||| ||||||| || || Sbjct 1546 TCTATGTGTAAGTCCTAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATG 1487 Query 102157 CACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTC 102216 | || || ||| | ||| | |||| | || | |||||| | | || Sbjct 1486 AATACCTTTCTCTTGTAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTC 1427 Query 102217 TTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA---TTCATTTTC 102273 ||| | ||||||||||| ||||| | ||| || || | || ||||| |||||| Sbjct 1426 CTCAGCTACACCTCTCCAGAATACACGCTTTGTTGTAAGTAGAGGAAAGCGTTCATTCCT 1367 Query 102274 TAAACTAAACCTAGACTGTGTTCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCA 102331 |||||| || || || ||||| |||| ||||| || || || ||||| ||| Sbjct 1366 TAAACTGAATCTCATTTGCACACCAAATTTACTGAGTGTACCTGTACCAGTTCTATCA 1309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 101786 TAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGA 101845 || |||||||| || |||||||| || | |||||||||||| | |||||||| |||| Sbjct 2051 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 1992 Query 101846 CAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACC 101905 || || | | |||| | ||||| || |||| || | |||||| || ||||| || Sbjct 1991 CATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCC 1932 Query 101906 ATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCT 101956 |||||| | || || |||||| || ||| || || | ||||||| Sbjct 1931 ATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCT 1881 >seq13159 Length=3473 Score = 98.7 bits (108), Expect = 7e-16 Identities = 201/298 (67%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 102037 ATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATC 102096 ||||| || || ||||| | ||| ||| | ||||| ||||| |||||||| ||||| || Sbjct 1606 ATATTTAGCACCAAAATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTC 1547 Query 102097 TCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTG 102156 ||| | || || ||||||||||| || |||| ||||| ||||||| || || Sbjct 1546 TCTATGTGTAAGTCCTAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATG 1487 Query 102157 CACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTC 102216 | || || ||| | ||| | |||| | || | |||||| | | || Sbjct 1486 AATACCTTTCTCTTGTAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTC 1427 Query 102217 TTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA---TTCATTTTC 102273 ||| | ||||||||||| ||||| | ||| || || | || ||||| |||||| Sbjct 1426 CTCAGCTACACCTCTCCAGAATACACGCTTTGTTGTAAGTAGAGGAAAGCGTTCATTCCT 1367 Query 102274 TAAACTAAACCTAGACTGTGTTCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCA 102331 |||||| || || || ||||| |||| ||||| || || || ||||| ||| Sbjct 1366 TAAACTGAATCTCATTTGCACACCAAATTTACTGAGTGTACCTGTACCAGTTCTATCA 1309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 101786 TAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGA 101845 || |||||||| || |||||||| || | |||||||||||| | |||||||| |||| Sbjct 2051 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 1992 Query 101846 CAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACC 101905 || || | | |||| | ||||| || |||| || | |||||| || ||||| || Sbjct 1991 CATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCC 1932 Query 101906 ATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCT 101956 |||||| | || || |||||| || ||| || || | ||||||| Sbjct 1931 ATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCT 1881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361156149051839