Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq17042 98.7 1e-15 seq20382 89.7 6e-13 seq9502 86.0 7e-12 >seq17042 Length=860 Score = 98.7 bits (108), Expect = 1e-15 Identities = 200/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| | |||||||| || |||||||| || | | || | | | ||| ||||| Sbjct 555 CCAGGCATCATACCACGCTTCTTGAGCCAAAAGATAG-CACAGAAGCTGCCACTGAAGAA 613 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC---TGTCATG 24310 || ||||||||||| |||||||| | | || || || | | || | |||| Sbjct 614 GATACCTTCTACTGCAGCAAAGGCCACCAATCGCTCAGCAAAGCTTGCTACCTTCTCATC 673 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 | |||| | | ||||| |||||||| | |||||||| | ||||| |||||||| Sbjct 674 AAACCACCTCAGTGCCCAGCTTGCCTTCTTGGTCACACAAGGGACAGTCTCAATAGCATT 733 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 || || | | | || ||| | | || || || ||| ||||||| ||| |||| Sbjct 734 GAACAGCTTGCTCTTCTCAGTGTTGTCCTTGACCAGTGTGTCAATCAGCAGAGAGTACAC 793 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 || || ||||||||||| || || || || |||||||| || | ||||| Sbjct 794 CTCGCTGTGGATGTTTTCAATAGCAATCTGGAAGCCGTAGAAGCAGCGGGCCTC 847 >seq20382 Length=10560 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 53755 TATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 53814 || |||||||||||| || || || | |||||| || ||||| ||||| || |||||||| Sbjct 2995 TAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATAGTGCCTAAGTTTTGCTGGTTACTCTT 2936 Query 53815 TTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 |||| || |||||||| || || ||| | || || ||||| |||| Sbjct 2935 GCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAA 2889 >seq9502 Length=9919 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 53755 TATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 53814 || |||||||||||| || || || | |||||| || ||||| || || || |||||||| Sbjct 7057 TAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTGGTTACTCTT 7116 Query 53815 TTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 |||| || |||||||| || || ||| | || || ||||| |||| Sbjct 7117 GCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAA 7163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593561376804720