Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2369 111 1e-19 seq4375 107 2e-18 seq1251 107 2e-18 >seq2369 Length=1144 Score = 111 bits (122), Expect = 1e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| |||| |||||| |||||||||||||| | | Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| ||| | || || | ||||||||| || Sbjct 296 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 237 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || ||||| | | | | ||| ||| ||||| Sbjct 236 ATGCCCTCCTTGTCCTGNATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACA 177 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | || ||||||||||| || Sbjct 176 TCAAGAGTGATGGTCTTGCCAGT 154 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 20938 TGAGCCCGTTT--CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAAT 20995 |||| ||||| || || || || | ||||||| |||| ||| |||||| ||||| Sbjct 835 TGAGAGCGTTTAACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAAT 776 Query 20996 GTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTG 21055 ||| ||||| | ||| || || | ||||| ||||| ||||| || | || || | ||| Sbjct 775 GTTGTAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTG 716 Query 21056 CTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATC 21115 |||||| || | ||| |||||||| ||||| || ||||| | | | | ||| || Sbjct 715 CTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTC 656 Query 21116 ACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 | ||||| |||| || ||||||||||| || Sbjct 655 AGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGT 620 >seq4375 Length=1004 Score = 107 bits (118), Expect = 2e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014 ||||| | ||||||| |||| |||| |||||| || ||||| || || | ||| || Sbjct 2 CGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTG 61 Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 || | ||||| ||||| ||||| ||| | || || | ||||||||| || | ||| Sbjct 62 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCC 121 Query 21075 TCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACG 21134 |||||||| ||||| || ||||| | | | | ||| ||| ||||| || | Sbjct 122 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGA 181 Query 21135 GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || |||||||||||||| | || || || || || ||||| Sbjct 182 GTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq1251 Length=1604 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 20938 TGAGCCCGTTT--CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAAT 20995 |||| ||||| || || || || | ||||||| |||| ||| |||||| ||||| Sbjct 310 TGAGAGCGTTTAACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAAT 369 Query 20996 GTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTG 21055 ||| ||||| | ||| || || | ||||| ||||| ||||| ||| | || || | ||| Sbjct 370 GTTGTAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTG 429 Query 21056 CTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATC 21115 |||||| || | ||| |||||||| |||||| || ||||| | | | | ||| || Sbjct 430 CTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGTGTC 489 Query 21116 ACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 | ||||| |||| || ||||||||||| || Sbjct 490 AGATGGCTCAACATCCAGTGTGATGGTCTTGCCAGT 525 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||| |||||| || ||||||||||| | | Sbjct 806 CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGAC 865 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| ||| | || || | ||||||||| || Sbjct 866 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 925 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || ||||| | | | | ||| ||| ||||| Sbjct 926 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACA 985 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | || ||||||||||| || Sbjct 986 TCAAGAGTGATGGTCTTGCCAGT 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422148096874724