Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1251 134 1e-26 seq18313 122 9e-23 seq4375 122 9e-23 seq18312 120 3e-22 seq2369 109 6e-19 seq17042 104 2e-17 >seq1251 Length=1604 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || |||||||||||||| | || || || |||| | Sbjct 1498 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGA-GCCATC 1440 Query 40750 -GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| | ||| | || |||| ||||| ||||||||||| | |||| Sbjct 1439 TGACACCATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACC 1381 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| ||||| ||||| || || | ||||| || ||| |||| Sbjct 1380 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACA 1321 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| ||| ||||| || ||| |||| || | || ||| Sbjct 1320 ACATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCGTCTGCGTGGAGGC 1271 Score = 105 bits (116), Expect = 7e-18 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC-GACAGCGTGCA-AACGCTCA 40768 || || ||||| |||||||| | || || || |||| | |||| | | |||| | | Sbjct 1011 CTGACTGGCAAGACCATCACTCTTGATGTTGA-GCCATCTGACACTATTGACAACG-TGA 954 Query 40769 AGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGG 40828 || | || |||| ||||| ||||||||||| | |||||||| || || |||| || | Sbjct 953 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 894 Query 40829 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGC 40888 |||| ||||| || || | ||||| || ||||| ||||||||||||||| ||| | Sbjct 893 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATCCAGAAGGAGAGCACAC 834 Query 40889 TGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| || ||| |||| || | || ||| Sbjct 833 TGCACCTGGTGCTGCGTCTGCGTGGAGGC 805 Score = 100 bits (110), Expect = 3e-16 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC-GACAGCGTGCA-AACGCTCA 40768 || || ||||| |||||||| | || || || |||| | |||| | | |||| | | Sbjct 528 CTGACTGGCAAGACCATCACACTGGATGTTGA-GCCATCTGACACTATTGACAACG-TGA 471 Query 40769 AGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGG 40828 || | || || | ||||| ||||||||||| | |||||||| || || |||| || | Sbjct 470 AGCAGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 411 Query 40829 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGC 40888 |||| ||||| || || | ||||| || ||||||||||| ||||||||| ||| | Sbjct 410 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACAC 351 Query 40889 TGCATCTAGTGTTGCG 40904 |||| || ||| |||| Sbjct 350 TGCACCTGGTGCTGCG 335 >seq18313 Length=2265 Score = 122 bits (134), Expect = 9e-23 Identities = 114/144 (79%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| | || || | ||||| |||||||||||| | || ||||| || ||||| Sbjct 2252 AACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGCAGCGTCTCAT 2194 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| ||||| || || | ||||| || | ||||||||||||||||||||| Sbjct 2193 CTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAAGGA 2134 Query 40881 GGCCACGCTGCATCTAGTGTTGCG 40904 | ||| ||||| || ||| |||| Sbjct 2133 GAGCACTCTGCACCTGGTGCTGCG 2110 >seq4375 Length=1004 Score = 122 bits (134), Expect = 9e-23 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || || |||| | Sbjct 222 ATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTGA-GCCATC 164 Query 40750 -GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | ||| | || |||| ||||| ||||||||||| | |||| Sbjct 163 TGACACTATTGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACC 105 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| || ||||| ||||| || || | ||||| || || |||| Sbjct 104 AGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGATTACA 45 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| ||| ||||| || ||| |||| Sbjct 44 ACATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCG 8 >seq18312 Length=2245 Score = 120 bits (132), Expect = 3e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| | || || | ||||| |||||||||||| | || ||||| || ||||||| || Sbjct 2243 TCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGCAGCGTCTCATCTTCG 2184 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||||| || || | ||||| || | |||||||||||||||||||||| || Sbjct 2183 CTGGCAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGAGCA 2124 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | ||||| || ||| |||| Sbjct 2123 CTCTGCACCTGGTGCTGCG 2105 >seq2369 Length=1144 Score = 109 bits (120), Expect = 6e-19 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC-GACAGCGTGCA-AACGCTCA 40768 || || ||||| |||||||| | || || || |||| | |||| | | |||| | | Sbjct 617 CTGACTGGCAAGACCATCACTCTGGATGTTGA-GCCATCTGACACTATTGACAACG-TGA 674 Query 40769 AGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGG 40828 || | || |||| ||||| ||||||||||| | |||||||| || || |||| ||| | Sbjct 675 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTG 734 Query 40829 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGC 40888 |||| ||||| || || | ||||| || ||||||||||| ||||||||| ||| | Sbjct 735 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACAC 794 Query 40889 TGCATCTAGTGTTGCG 40904 |||| || ||| |||| Sbjct 795 TGCACCTGGTGCTGCG 810 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC-GACAGCGTGCA-AACGCTCA 40768 || || ||||| |||||||| | || || || |||| | |||| | | |||| | | Sbjct 151 CTGACTGGCAAGACCATCACTCTTGATGTTGA-GCCATCTGACACTATTGACAACG-TGA 208 Query 40769 AGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGG 40828 || | || || | ||||| ||||||||||| | |||||||| || || |||| || | Sbjct 209 AGCAGAAGATNCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 268 Query 40829 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGC 40888 |||| ||||| || || | ||||| || ||||| ||||| ||||||||| ||| | Sbjct 269 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATTCAGAAGGAGAGCACTC 328 Query 40889 TGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| || ||| |||| || | || ||| Sbjct 329 TGCACCTGGTGCTGCGTCTGCGTGGAGGC 357 >seq17042 Length=860 Score = 104 bits (114), Expect = 2e-17 Identities = 253/378 (67%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883 |||||| || | ||||| || |||||||||||||| ||||| || || || ||| | || Sbjct 860 GGTGCAACTGCCAGAGGCCCGCTGCTTCTACGGCTTCCAGATTGCTATTGAAAACATCCA 801 Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTACGTGC-GCTCTTCGGAGGAGAAGCTCC 116942 | || |||| || || || ||||| || | | | | ||||| | Sbjct 800 CAGCGAGGTGTACTCTCTGCTGATTGACACACTGGTCAAGGACAACACTG-AGAAGAGCA 742 Query 116943 GTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGC 117002 |||| || || || ||||| | || || || | ||||||| ||||| ||| Sbjct 741 AGCTGTTCAATGCTATTGAGACTGTCCCTTGTGTGACCAAGAAGGCAAGCTGGGCACTGA 682 Query 117003 GCTGGATCGCCGGCAGAGAGGCCGC---CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCG 117059 | ||| | | | ||| ||| || ||| | ||||| |||||||||| || || | Sbjct 681 GGTGGTTTGATG--AGA-AGGTAGCAAGCTTTGCTGAGCGATTGGTGGCCTTTGCTGCAG 625 Query 117060 TCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCC 117119 | || || ||||||| ||||| ||| || || |||||||||||||| || || Sbjct 624 TAGAAGGTATCTTCTTCAGTGGCAGCTTCTGTGCTATCTTTTGGCTCAAGAAGCGTGGTA 565 Query 117120 TCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCG 117179 | ||||| ||| || |||||||| ||||| ||| | | || || |||||||| | Sbjct 564 TGATGCCTGGCTTGTGCTTCAGCAATGAGCTTATCAGCCGTGATGAAGGTCTGCACACAG 505 Query 117180 ACTTTGCCTGTTTGCTGT 117197 |||||||||| | |||| Sbjct 504 ACTTTGCCTGCCTACTGT 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515080161658640