Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq13161 84.2 2e-11 seq13160 84.2 2e-11 seq13159 84.2 2e-11 >seq13161 Length=3939 Score = 84.2 bits (92), Expect = 2e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 97356 TAATTGATCAACGCCTTCTCCACCATAAT---TGTGCTTAAGACCTTGATATTCTGCTCC 97412 |||||||||||| |||| ||| || | | ||| || | | ||||| || || Sbjct 869 TAATTGATCAACACCTTGGCCAGTGTAGTCTGTATGCATATCAAC---ATATTTAGCACC 925 Query 97413 AAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA 97472 |||||| | |||||| | ||||| ||||| ||||| || ||||||||||||| | Sbjct 926 AAAATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTCTCTATGTGTAAG 985 Query 97473 ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGC 97532 || || |||||||| | ||| ||||| ||||||| || || | ||| | Sbjct 986 TCCTAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATGAATACCTTTCTC 1045 Query 97533 TGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACC 97592 | || | ||| | |||| | || | |||||| | || || || | ||||| Sbjct 1046 TTGTAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTCCTCAGCTACACC 1105 Query 97593 TCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 |||||| ||||| | ||| ||||| | |||||||| Sbjct 1106 TCTCCAGAATACACGCTTTGTTGTAAGTAGAGGAAA 1141 >seq13160 Length=3470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 97356 TAATTGATCAACGCCTTCTCCACCATAAT---TGTGCTTAAGACCTTGATATTCTGCTCC 97412 |||||||||||| |||| ||| || | | ||| || | | ||||| || || Sbjct 1651 TAATTGATCAACACCTTGGCCAGTGTAGTCTGTATGCATATCAAC---ATATTTAGCACC 1595 Query 97413 AAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA 97472 |||||| | |||||| | ||||| ||||| ||||| || ||||||||||||| | Sbjct 1594 AAAATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTCTCTATGTGTAAG 1535 Query 97473 ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGC 97532 || || |||||||| | ||| ||||| ||||||| || || | ||| | Sbjct 1534 TCCTAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATGAATACCTTTCTC 1475 Query 97533 TGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACC 97592 | || | ||| | |||| | || | |||||| | || || || | ||||| Sbjct 1474 TTGTAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTCCTCAGCTACACC 1415 Query 97593 TCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 |||||| ||||| | ||| ||||| | |||||||| Sbjct 1414 TCTCCAGAATACACGCTTTGTTGTAAGTAGAGGAAA 1379 >seq13159 Length=3473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 97356 TAATTGATCAACGCCTTCTCCACCATAAT---TGTGCTTAAGACCTTGATATTCTGCTCC 97412 |||||||||||| |||| ||| || | | ||| || | | ||||| || || Sbjct 1651 TAATTGATCAACACCTTGGCCAGTGTAGTCTGTATGCATATCAAC---ATATTTAGCACC 1595 Query 97413 AAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA 97472 |||||| | |||||| | ||||| ||||| ||||| || ||||||||||||| | Sbjct 1594 AAAATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTCTCTATGTGTAAG 1535 Query 97473 ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGC 97532 || || |||||||| | ||| ||||| ||||||| || || | ||| | Sbjct 1534 TCCTAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATGAATACCTTTCTC 1475 Query 97533 TGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACC 97592 | || | ||| | |||| | || | |||||| | || || || | ||||| Sbjct 1474 TTGTAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTCCTCAGCTACACC 1415 Query 97593 TCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 |||||| ||||| | ||| ||||| | |||||||| Sbjct 1414 TCTCCAGAATACACGCTTTGTTGTAAGTAGAGGAAA 1379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346692755602730