Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq13161 172 8e-38 seq13160 172 8e-38 seq13159 172 8e-38 >seq13161 Length=3939 Score = 172 bits (190), Expect = 8e-38 Identities = 202/273 (74%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 205686 TAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAA 205745 ||||||||||| ||||| || || | ||||| |||||||| ||||||||||||||| Sbjct 869 TAATTGATCAACACCTTGGCCAGTGTAGTCTGTATGCATATCAACATATTTAGCACCAAA 928 Query 205746 ATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACC 205805 ||||||||||||| ||||||| || ||||| | ||||||||||| ||||| ||| || Sbjct 929 ATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTCTCTATGTGTAAGTCC 988 Query 205806 ACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttattttt 205865 |||| | || | | | ||||| ||||||| ||||| || ||||| | || Sbjct 989 TAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATGAATACCTTTCTCTTG 1048 Query 205866 taGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCT 205925 ||| | ||| | |||||| | |||| || |||||||| ||| || ||| | | ||||| Sbjct 1049 TAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTCCTCAGCTACACCTCT 1108 Query 205926 CCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 ||| || | |||||||||| || ||||| Sbjct 1109 CCAGAATACACGCTTTGTTGTAAGTAGAGGAAA 1141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 205474 CTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATT 205533 || |||||||||| ||| ||||| ||||| | ||||||||||| | |||||||||| Sbjct 466 CTGTAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATT 525 Query 205534 TGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGACAAGGTGG 205592 ||||||| | ||| | |||| |||| || || ||| |||| |||||| ||||| Sbjct 526 TGACATGACA---ATTCACCATTAGCAACATAGAACTG-ACAGAACATATGACATGGTGG 581 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTC 205652 | |||| || || | ||| |||||||| |||| | ||| ||| |||| ||| Sbjct 582 CAATGCCATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCTTC 641 Query 205653 AGG 205655 ||| Sbjct 642 AGG 644 >seq13160 Length=3470 Score = 172 bits (190), Expect = 8e-38 Identities = 202/273 (74%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 205686 TAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAA 205745 ||||||||||| ||||| || || | ||||| |||||||| ||||||||||||||| Sbjct 1651 TAATTGATCAACACCTTGGCCAGTGTAGTCTGTATGCATATCAACATATTTAGCACCAAA 1592 Query 205746 ATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACC 205805 ||||||||||||| ||||||| || ||||| | ||||||||||| ||||| ||| || Sbjct 1591 ATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTCTCTATGTGTAAGTCC 1532 Query 205806 ACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttattttt 205865 |||| | || | | | ||||| ||||||| ||||| || ||||| | || Sbjct 1531 TAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATGAATACCTTTCTCTTG 1472 Query 205866 taGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCT 205925 ||| | ||| | |||||| | |||| || |||||||| ||| || ||| | | ||||| Sbjct 1471 TAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTCCTCAGCTACACCTCT 1412 Query 205926 CCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 ||| || | |||||||||| || ||||| Sbjct 1411 CCAGAATACACGCTTTGTTGTAAGTAGAGGAAA 1379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 205474 CTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATT 205533 || |||||||||| ||| ||||| ||||| | ||||||||||| | |||||||||| Sbjct 2054 CTGTAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATT 1995 Query 205534 TGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGACAAGGTGG 205592 ||||||| | ||| | |||| |||| || || ||| |||| |||||| ||||| Sbjct 1994 TGACATGACA---ATTCACCATTAGCAACATAGAACTG-ACAGAACATATGACATGGTGG 1939 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTC 205652 | |||| || || | ||| |||||||| |||| | ||| ||| |||| ||| Sbjct 1938 CAATGCCATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCTTC 1879 Query 205653 AGG 205655 ||| Sbjct 1878 AGG 1876 >seq13159 Length=3473 Score = 172 bits (190), Expect = 8e-38 Identities = 202/273 (74%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 205686 TAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAA 205745 ||||||||||| ||||| || || | ||||| |||||||| ||||||||||||||| Sbjct 1651 TAATTGATCAACACCTTGGCCAGTGTAGTCTGTATGCATATCAACATATTTAGCACCAAA 1592 Query 205746 ATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACC 205805 ||||||||||||| ||||||| || ||||| | ||||||||||| ||||| ||| || Sbjct 1591 ATGACGCCATTGATAACCATATACAGGACCAAGATCACCTTCTTCTCTATGTGTAAGTCC 1532 Query 205806 ACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttattttt 205865 |||| | || | | | ||||| ||||||| ||||| || ||||| | || Sbjct 1531 TAGTTTATCTAAGAACTCTCTACTACCATTACCATCCCATATATGAATACCTTTCTCTTG 1472 Query 205866 taGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCT 205925 ||| | ||| | |||||| | |||| || |||||||| ||| || ||| | | ||||| Sbjct 1471 TAGTACATTGGCATTAGTACAACCAGCTACAAACCATAGTAACTCCTCAGCTACACCTCT 1412 Query 205926 CCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 ||| || | |||||||||| || ||||| Sbjct 1411 CCAGAATACACGCTTTGTTGTAAGTAGAGGAAA 1379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 205474 CTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATT 205533 || |||||||||| ||| ||||| ||||| | ||||||||||| | |||||||||| Sbjct 2054 CTGTAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATT 1995 Query 205534 TGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGACAAGGTGG 205592 ||||||| | ||| | |||| |||| || || ||| |||| |||||| ||||| Sbjct 1994 TGACATGACA---ATTCACCATTAGCAACATAGAACTG-ACAGAACATATGACATGGTGG 1939 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTC 205652 | |||| || || | ||| |||||||| |||| | ||| ||| |||| ||| Sbjct 1938 CAATGCCATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCTTC 1879 Query 205653 AGG 205655 ||| Sbjct 1878 AGG 1876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755252130755200