Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1251 143 3e-29 seq4375 129 7e-25 seq2369 123 3e-23 seq18313 105 8e-18 seq18312 105 8e-18 >seq1251 Length=1604 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| ||||| |||| ||||||||||| || || |||||||| | | Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| |||||||| || || ||||||||||| | || Sbjct 1332 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 1391 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| || || || || | ||| | | | ||||| | || || Sbjct 1392 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATGGTGTCAGATGGCTCAAC 1450 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | |||||||||||||| || || ||||| |||||||| ||||| Sbjct 1451 ATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 123 bits (136), Expect = 3e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| ||||| |||| |||||||||||| ||||| ||||| |||| | Sbjct 323 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 382 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 383 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 442 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || || || | ||| | | | ||||| | || || Sbjct 443 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAAC 501 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAG 43162 ||| | |||||||| ||||| || || Sbjct 502 ATCCAGTGTGATGGTCTTGCCAGTCAG 528 Score = 109 bits (120), Expect = 6e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| ||||| |||| |||||||||||| || || || || |||| | Sbjct 806 CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGAC 865 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 866 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 925 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| || || || || | ||| | | | ||||| | || || Sbjct 926 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAAC 984 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAG 43162 ||| | |||||||| ||||| || || Sbjct 985 ATCAAGAGTGATGGTCTTGCCAGTCAG 1011 >seq4375 Length=1004 Score = 129 bits (142), Expect = 7e-25 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| ||||||||||| || || |||||||||| ||| || || | Sbjct 7 ACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCC 66 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || ||||||||||| | || | || |||||| Sbjct 67 ATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTT 126 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | ||||| | || ||||| | |||| Sbjct 127 GTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGA 185 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| || ||||| ||||| Sbjct 186 TGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq2369 Length=1144 Score = 123 bits (136), Expect = 3e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| ||||| |||| |||||||||||| ||||| ||||| |||| | Sbjct 822 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 763 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| |||||||| || || ||||||||||| | || Sbjct 762 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 703 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| || || || || | ||| | | | ||||| | || || Sbjct 702 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAAC 644 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAG 43162 ||| | |||||||| ||||| || || Sbjct 643 ATCCAGAGTGATGGTCTTGCCAGTCAG 617 Score = 111 bits (122), Expect = 2e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| ||||| |||| ||||||||||| ||||| || || |||| | Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 296 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 237 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| || || || || | ||| | | | ||||| | || || Sbjct 236 ATGCCCTCCTTGTCCTGNATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAAC 178 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAG 43162 ||| | |||||||| ||||| || || Sbjct 177 ATCAAGAGTGATGGTCTTGCCAGTCAG 151 >seq18313 Length=2265 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| ||||| |||| ||||||||||| || || ||||| || | Sbjct 2098 CCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 2157 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| |||||||| ||||| |||||||| || | || Sbjct 2158 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 2217 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGA 43107 | || |||||||||| ||| || || |||| Sbjct 2218 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA 2248 >seq18312 Length=2245 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| ||||| |||| ||||||||||| || || ||||| || | Sbjct 2093 CCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 2152 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| |||||||| ||||| |||||||| || | || Sbjct 2153 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 2212 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGA 43107 | || |||||||||| ||| || || |||| Sbjct 2213 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA 2243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571663287872920