Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1251 143 2e-29 seq4375 129 4e-25 seq2369 109 4e-19 seq18313 102 5e-17 seq18312 102 5e-17 >seq1251 Length=1604 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| || || ||||| |||||||| |||||| Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || ||||||||||| || Sbjct 1332 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 1391 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || | || | | || || Sbjct 1392 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAACA 1451 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||||||||| || || || |||||||||||||| Sbjct 1452 TCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 105 bits (116), Expect = 4e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||||||| | || || || ||||| ||||||||||| ||| Sbjct 323 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 382 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||||||||| || Sbjct 383 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 442 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || | || | | || || Sbjct 443 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACA 502 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAG 34370 |||| |||||||| ||||| || |||| Sbjct 503 TCCAGTGTGATGGTCTTGCCAGTCAGAG 530 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || || ||||| ||||| ||||| ||| Sbjct 806 CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGAC 865 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||||||||| || Sbjct 866 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 925 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || | || | | || || Sbjct 926 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACA 985 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAG 34370 || | |||||||| ||||| || |||| Sbjct 986 TCAAGAGTGATGGTCTTGCCAGTCAGAG 1013 >seq4375 Length=1004 Score = 129 bits (142), Expect = 4e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA 34228 ||||| | |||||||||||| | ||| || || ||||| |||||||| || ||||| Sbjct 2 CGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTG 61 Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 ||| | || || | ||||||||| || || || || ||||||||||| || | || | Sbjct 62 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCC 121 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 |||||||| ||||| ||||| | | | | || | || | | || || || | Sbjct 122 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGA 181 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| |||||||| || || ||||| ||||||||||| Sbjct 182 GTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq2369 Length=1144 Score = 109 bits (120), Expect = 4e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||||||| | || || || ||||| ||||||||||| ||| Sbjct 822 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 763 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || ||||||||||| || Sbjct 762 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 703 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || | || | | || || Sbjct 702 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACA 643 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAG 34370 |||| |||||||| ||||| || |||| Sbjct 642 TCCAGAGTGATGGTCTTGCCAGTCAGAG 615 Score = 105 bits (116), Expect = 4e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| || || ||||| ||||| ||||| ||| Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||||||||| || Sbjct 296 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 237 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || | || | | || || Sbjct 236 ATGCCCTCCTTGTCCTGNATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACA 177 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAG 34370 || | |||||||| ||||| || |||| Sbjct 176 TCAAGAGTGATGGTCTTGCCAGTCAGAG 149 >seq18313 Length=2265 Score = 102 bits (112), Expect = 5e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||||||| | ||| || || ||||| |||||||||||| | Sbjct 2098 CCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 2157 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| ||||| |||||||| || ||| Sbjct 2158 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 2217 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTT 34311 | || ||||||||| ||||| ||||| Sbjct 2218 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 2246 >seq18312 Length=2245 Score = 102 bits (112), Expect = 5e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||||||| | ||| || || ||||| |||||||||||| | Sbjct 2093 CCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 2152 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| ||||| |||||||| || ||| Sbjct 2153 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 2212 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTT 34311 | || ||||||||| ||||| ||||| Sbjct 2213 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 2241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322986994607840