Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq17042 95.1 1e-14 seq14113 91.5 1e-13 >seq17042 Length=860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 288/436 (66%), Gaps = 8/436 (2%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 ||||||||||||||||| || || || |||| || ||| || | ||||| |||| || Sbjct 219 ACTCTCTTTTCAAAGAAGTTCGTCTTGCCTTGTAGTGAGATCATATCCATCCAATCGAAT 278 Query 16019 GGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACA 16078 ||||| || || ||| | ||||| || || | | | || || ||| || || ||| Sbjct 279 GGATTAGATGCACCATACTGCTTATCACAGCCTAGTGTAAGCAGTAGTCTGTCTGCTACA 338 Query 16079 AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCT 16138 || || || ||||| ||| | ||| |||||| || |||| | |||||| | || Sbjct 339 AACTCAATGTACTGGCACATCAGCCCACTGTTCATACCAATTAGCTCAACAGGCAGAGCA 398 Query 16139 TCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTA 16198 ||| | || | || || || || || || ||| || ||| | |||| | || Sbjct 399 CTTGTGATGAATTCCTTCTCAATCTTGACTGCATCACCAATGATAGCAACTACT-CGCT- 456 Query 16199 TTTAACGGAGGGT-TTAATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATC 16256 || |||| | || | ||| | | ||| || || ||||| || |||| | Sbjct 457 CTTGTGGGAGCTTGTTGACAAGCTTGCCATACAGTAGGCAGGCAAAGTCTGTGTGCAGAC 516 Query 16257 CTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTT 16314 |||| || | || || | ||| || || || ||| || ||||| | || || || Sbjct 517 CTTCATCACGGCTGATAAGCTCATTGCTG-AAGCACAAG-CCAGGCATCATACCACGCTT 574 Query 16315 TTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAA 16374 || | |||||| ||||| || ||| ||||| |||||||| ||||| ||||| Sbjct 575 CTTGAGCCAAAAGATAGCACAGAAGCTGCCACTGAAGAAGATACCTTCTACTGCAGCAAA 634 Query 16375 TGCAACCAATCGCTCA 16390 || |||||||||||| Sbjct 635 GGCCACCAATCGCTCA 650 >seq14113 Length=4422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 ||||||||||||||||| ||||| || |||| || || || | ||||| ||||||| Sbjct 4229 ACTCTCTTTTCAAAGAAGTTTGTCTTGCCTTGTAGCGAGATCATATCCATCCAATCAAAT 4288 Query 16019 GGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACA 16078 ||||| || || ||| | ||||| || || | | | || || ||| || || ||| Sbjct 4289 GGATTAGATGCACCATATTGCTTATCACAGCCTAGTGTAAGCAGTAGTCTGTCTGCTACA 4348 Query 16079 AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGG 16131 || || || ||||| ||| || ||| |||||| || |||| | |||||| Sbjct 4349 AACTCAATGTACTGGCACATCAACCCACTGTTCATACCAATTAGCTCAACAGG 4401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462387185355400