Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq13161 132 4e-26 seq13160 132 4e-26 seq13159 132 4e-26 >seq13161 Length=3939 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| ||||| |||||||||||| | || || || || ||||||||| ||||||||| Sbjct 591 AATGGCATTGCCACCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTC 532 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||||||||||||||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 531 ATGTCAAATGTATCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGCTAG 472 Query 20520 TTA 20522 ||| Sbjct 471 TTA 469 >seq13160 Length=3470 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| ||||| |||||||||||| | || || || || ||||||||| ||||||||| Sbjct 1929 AATGGCATTGCCACCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTC 1988 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||||||||||||||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 1989 ATGTCAAATGTATCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGCTAG 2048 Query 20520 TTA 20522 ||| Sbjct 2049 TTA 2051 >seq13159 Length=3473 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| ||||| |||||||||||| | || || || || ||||||||| ||||||||| Sbjct 1929 AATGGCATTGCCACCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTC 1988 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||||||||||||||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 1989 ATGTCAAATGTATCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGCTAG 2048 Query 20520 TTA 20522 ||| Sbjct 2049 TTA 2051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399078968327605