Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1251 118 8e-22 seq4375 114 1e-20 seq2369 104 2e-17 seq18313 93.3 3e-14 seq18312 93.3 3e-14 >seq1251 Length=1604 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||| |||||||| ||| ||| ||| | || || Sbjct 1290 ACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCA 1349 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| | Sbjct 1350 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 1409 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | | |||| ||| || || | || || || ||| Sbjct 1410 ATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAACATCAAGAGTGATGGTTTTG 1469 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| |||||||| |||||| Sbjct 1470 CCGGTCAGTGTCTTGACAAAGATCTGCATG 1499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||||||||||||||| ||| ||| | || || Sbjct 341 ACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCA 400 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| Sbjct 401 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGG 460 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| ||| || |||| || || |||||| Sbjct 461 ATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGTGTGATGGTCTTG 520 Query 45308 CCCGTCAGAG 45317 || ||||||| Sbjct 521 CCAGTCAGAG 530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||| ||||| ||||| ||| ||| | || || Sbjct 824 ACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGACAGAGTGCGGCCATCCTCA 883 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| | Sbjct 884 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 943 Query 45248 ATTTTTTGCTTAAC 45261 || || ||||| || Sbjct 944 ATCTTCTGCTTCAC 957 >seq4375 Length=1004 Score = 114 bits (126), Expect = 1e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||| |||||||| || |||| ||| | || || Sbjct 14 ACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCCTCA 73 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| | Sbjct 74 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 133 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| ||| || || | || || |||||| Sbjct 134 ATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTCTTG 193 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 194 CCGGTCAGTGTCTTCACGAAGATCTGCATG 223 >seq2369 Length=1144 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||||||||||||||| ||| ||| | || || Sbjct 804 ACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCA 745 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| | Sbjct 744 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 685 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| ||| || |||| || || |||||| Sbjct 684 ATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGAGTGATGGTCTTG 625 Query 45308 CCCGTCAGAG 45317 || ||||||| Sbjct 624 CCAGTCAGAG 615 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||||||||| ||||| ||| ||| | || || Sbjct 338 ACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGACAGAGTGCGGCCATCCTCA 279 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| Sbjct 278 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGN 219 Query 45248 ATTTTTTGCTTAAC 45261 || || ||||| || Sbjct 218 ATCTTCTGCTTCAC 205 >seq18313 Length=2265 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||| |||||||||||| |||| ||| | || || Sbjct 2116 ACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCG 2175 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| || || || || | |||||||||||| Sbjct 2176 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGG 2235 Query 45248 ATTTTTTGCTTAAC 45261 || || ||||| || Sbjct 2236 ATCTTCTGCTTGAC 2249 >seq18312 Length=2245 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||||||||||||| |||||||||||| |||| ||| | || || Sbjct 2111 ACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCG 2170 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| || || || || | |||||||||||| Sbjct 2171 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGG 2230 Query 45248 ATTTTTTGCTTAAC 45261 || || ||||| || Sbjct 2231 ATCTTCTGCTTGAC 2244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394971249418369