Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq17042 91.5 1e-13 seq14113 91.5 1e-13 >seq17042 Length=860 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 ||||| |||||||||||||| || || |||| ||||| || | ||||| |||| ||| Sbjct 219 ACTCTCTTTTCAAAGAAGTTCGTCTTGCCTTGTAGTGAGATCATATCCATCCAATCGAAT 278 Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047 ||||| | || | || |||||||| |||||| | |||| ||| || || | Sbjct 279 GGATTAGATGCACCATACTGCTTATCACAGCCTAGTGTAAGCAGTAGTCTGTCTGCTACA 338 Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGG 14100 |||||||| || || |||| | ||| |||||||| ||||| | ||||| Sbjct 339 AACTCAATGTACTGGCACATCAGCCCACTGTTCATACCAATTAGCTCAACAGG 391 >seq14113 Length=4422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 ||||| |||||||||||||| || || |||| || || || | ||||| |||||||| Sbjct 4229 ACTCTCTTTTCAAAGAAGTTTGTCTTGCCTTGTAGCGAGATCATATCCATCCAATCAAAT 4288 Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047 ||||| | || | | |||||||| |||||| | |||| ||| || || | Sbjct 4289 GGATTAGATGCACCATATTGCTTATCACAGCCTAGTGTAAGCAGTAGTCTGTCTGCTACA 4348 Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGG 14100 |||||||| || || |||| || ||| |||||||| ||||| | ||||| Sbjct 4349 AACTCAATGTACTGGCACATCAACCCACTGTTCATACCAATTAGCTCAACAGG 4401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482215433010520