Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1251 118 9e-22 seq4375 111 1e-19 seq2369 96.9 3e-15 >seq1251 Length=1604 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| |||||||| ||||| | || ||||| || || Sbjct 1499 CATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATC 1440 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || |||| || ||||||||| ||| | || || ||||| Sbjct 1439 TGACACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 1380 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || || ||| || |||||| || Sbjct 1379 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAA 1320 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || ||||| || Sbjct 1319 CATCCAGAAGGAGAGCACTCTGCACCTGGTGCT 1287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 31212 CTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCA 31271 ||||||| ||||| || ||||| | || ||||| || || |||| | | || | || | Sbjct 530 CTCTGACTGGCAAGACCATCACACTGGATGTTGAGCCATCTGACACTATTGACAACGTGA 471 Query 31272 AACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTG 31331 | |||| || ||||||||| ||| | || || |||||||||||||| || || |||| Sbjct 470 AGCAGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 411 Query 31332 GCAAACAGTTGGAAGA 31347 |||| ||| | || || Sbjct 410 GCAAGCAGCTTGAGGA 395 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 31212 CTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCA 31271 ||||||| ||||| || ||||| | || ||||| || || |||| | | || | || | Sbjct 1013 CTCTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGA 954 Query 31272 AACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTG 31331 | |||| || ||||||||| ||| | || || |||||||||||||| || || |||| Sbjct 953 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 894 Query 31332 GCAAACAGTTGGAAGA 31347 |||| ||| | || || Sbjct 893 GCAAGCAGCTTGAGGA 878 >seq4375 Length=1004 Score = 111 bits (122), Expect = 1e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || ||| |||||| || ||||| ||||| ||||| ||||| || ||||| | || |||| Sbjct 230 AAACAATCATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTG 171 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | || || |||| | | || | || || |||| || ||||||||| ||| | || | Sbjct 170 AGCCATCTGACACTATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCAC 111 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | |||||||||||||| || || |||||||| ||| | || || Sbjct 110 CTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGA 68 >seq2369 Length=1144 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 31212 CTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCA 31271 ||||||| ||||| || ||||| | || ||||| || || |||| | | || | || | Sbjct 149 CTCTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGA 208 Query 31272 AACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTG 31331 | |||| || ||||||||| ||| | || || |||||||||||||| || || |||| Sbjct 209 AGCAGAAGATNCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 268 Query 31332 GCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTC 31391 |||| ||| | || || ||| || || ||||||||||| || || |||| Sbjct 269 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATTCAGAAGGAGAGCACTC 328 Query 31392 TTCATCTGGTACT 31404 | || ||||| || Sbjct 329 TGCACCTGGTGCT 341 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 31212 CTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCA 31271 ||||||| ||||| || ||||| | || ||||| || || |||| | | || | || | Sbjct 615 CTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCTGACACTATTGACAACGTGA 674 Query 31272 AACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTG 31331 | |||| || ||||||||| ||| | || || |||||||||||||| || ||||||| Sbjct 675 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTG 734 Query 31332 GCAAACAGTTGGAAGA 31347 |||| ||| | || || Sbjct 735 GCAAGCAGCTTGAGGA 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445646104364880