Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq17042 118 2e-21 seq13161 89.7 1e-12 seq13160 89.7 1e-12 seq13159 89.7 1e-12 >seq17042 Length=860 Score = 118 bits (130), Expect = 2e-21 Identities = 289/435 (66%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| |||||||| ||||| ||| | || || ||| Sbjct 640 GTGGCCTTTGCTGCAGTAGAAGGTATCTTCTTCAGTGGCAGCTTCTGTGCTATCTTTTGG 581 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||||| ||||||| | || | ||||||| | || | || Sbjct 580 CTCAAGAAGCGTGGTATGATGCCTGGCTTGTGCTTCAGCAATGAGCTTATCAGCCGTGAT 521 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGT-TGAAAAAGGGTTTTGTTGATACCCC 102096 |||||||| || |||||||| ||| | |||| || || | || | | | || Sbjct 520 GAAGGTCTGCACACAGACTTTGCCTGCCTACTGTATGGCAA--GCTTGTCAACAAGCTCC 463 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 |||||| || | | || || | ||| || ||| ||||| | ||||| | Sbjct 462 CACAAGAGCGAGTAGT--TGCTATCATTGGTGATGCAGTCAAGATTGAGAAGGAATTCAT 405 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 |||| | | ||||||||| | || | || |||||| | | ||||| |||||||||| Sbjct 404 CACAAGTGCTCTGCCTGTTGAGCTAATTGGTATGAACAGTGGGCTGATGTGCCAGTACAT 345 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 ||| ||||| ||||| | |||| || || | | || || ||||| ||| || | Sbjct 344 TGAGTTTGTAGCAGACAGACTACTGCTTACACTAGGCTGTGATAAGCAGTATGGTGCATC 285 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || ||| | ||||| | || || || | ||||| ||||| |||||||| Sbjct 284 TAATCCATTCGATTGGATGGATATGATCTCACTACAAGGCAAGACGAACTTCTTTGAAAA 225 Query 102337 GAGAGTCGCCGAGTA 102351 |||||| | ||||| Sbjct 224 GAGAGTAGGAGAGTA 210 >seq13161 Length=3939 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || || |||||| | || || || | ||||||||||| ||||| | ||||| Sbjct 644 CCTGAAGATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCA 585 Query 35585 CTTCCTCCATGCCACATGA-CTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 | || ||||| || ||| ||| ||| || ||||| |||||||| |||||||| || || Sbjct 584 TTGCCACCATGTCATATGTTCTG-TCAGTTCTATGTTGCTAATGGTGAATTGTCATGTCA 526 Query 35644 GTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||||||| || || | ||| | ||| | || ||||| ||||||||||| Sbjct 525 AATGTATCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGC 475 >seq13160 Length=3470 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || || |||||| | || || || | ||||||||||| ||||| | ||||| Sbjct 1876 CCTGAAGATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCA 1935 Query 35585 CTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 | || ||||| || ||| ||| ||| || ||||| |||||||| |||||||| || || Sbjct 1936 TTGCCACCATGTCATATGTTCTG-TCAGTTCTATGTTGCTAATGGTGAATTGTCATGTCA 1994 Query 35644 GTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||||||| || || | ||| | ||| | || ||||| ||||||||||| Sbjct 1995 AATGTATCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGC 2045 >seq13159 Length=3473 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || || |||||| | || || || | ||||||||||| ||||| | ||||| Sbjct 1876 CCTGAAGATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCA 1935 Query 35585 CTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 | || ||||| || ||| ||| ||| || ||||| |||||||| |||||||| || || Sbjct 1936 TTGCCACCATGTCATATGTTCTG-TCAGTTCTATGTTGCTAATGGTGAATTGTCATGTCA 1994 Query 35644 GTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||||||| || || | ||| | ||| | || ||||| ||||||||||| Sbjct 1995 AATGTATCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGC 2045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989310272097495