Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq17042 100 4e-16 seq20382 89.7 7e-13 seq9502 87.8 3e-12 >seq17042 Length=860 Score = 100 bits (110), Expect = 4e-16 Identities = 228/340 (67%), Gaps = 5/340 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||||||| || || | || || || || ||| || | || ||||| | || Sbjct 509 GTGCAGACCTTCATCACGGCTGATAAGCTCATTGCTGAAGCACAAGCCAGGCATCATACC 568 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCCTTCTACTG 50092 |||||| || |||||||| || | | || | | ||| |||||||| |||||||||| Sbjct 569 ACGCTTCTTGAGCCAAAAGATAG-CACAGAAGCTGCCACTGAAGAAGATACCTTCTACTG 627 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACTTTTGAG 50149 | |||||||| || | || ||| || | || || | |||| | |||| | | | Sbjct 628 CAGCAAAGGCCACCAATCGCTCAGCAAAGCTTGCTACCTTCTCATCAAACCACCTCAGTG 687 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| |||||||| | |||||||| | || || || ||||| || || | | | | Sbjct 688 CCCAGCTTGCCTTCTTGGTCACACAAGGGACAGTCTCAATAGCATTGAACAGCTTGCTCT 747 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | ||| | | || || || || || |||| ||| |||| || || |||| Sbjct 748 TCTCAGTGTTGTCCTTGACCAGTGTGTCAATCAGCAGAGAGTACACCTCGCTGTGGATGT 807 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||| || ||||| || |||||||| || | ||||| Sbjct 808 TTTCAATAGCAATCTGGAAGCCGTAGAAGCAGCGGGCCTC 847 >seq20382 Length=10560 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 79665 TATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTT 79724 || ||| |||||||||||||| || | ||| || || ||||| ||||| || |||||||| Sbjct 2995 TAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATAGTGCCTAAGTTTTGCTGGTTACTCTT 2936 Query 79725 TTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 |||| || |||||||| || || ||| | || || ||||| |||| Sbjct 2935 GCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAA 2889 >seq9502 Length=9919 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 79665 TATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTT 79724 || ||| |||||||||||||| || | ||| || || ||||| || || || |||||||| Sbjct 7057 TAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTGGTTACTCTT 7116 Query 79725 TTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTAT 79784 |||| || |||||||| || || ||| | || || ||||| |||| ||| |||| Sbjct 7117 GCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAACTTGACTCTCTAG 7176 Query 79785 AATCGCTTTCCAGACGACTCGAGCCTTTATT 79815 || || ||| || || | ||||| ||| Sbjct 7177 TATAGCAAACCACACTTCTTGTGCCTTAATT 7207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718074966185960