Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17042 116 5e-21 >seq17042 Length=860 Score = 116 bits (128), Expect = 5e-21 Identities = 235/342 (69%), Gaps = 9/342 (3%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||||||| ||||| | || || | || ||| || | || ||||| | || Sbjct 509 GTGCAGACCTTCATCACGGCTGATAAGCTCATTGCTGAAGCACAAGCCAGGCATCATACC 568 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTG 42197 |||||| || |||||||| |||| | || | | | ||| |||||||| |||||||||| Sbjct 569 ACGCTTCTTGAGCCAAAAGATAG-CACAGAAGCTGCCACTGAAGAAGATACCTTCTACTG 627 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-AC--TGTCATGTATCCACTTTTGAG 42254 | |||||||| | | || ||| || | | || || | |||| | |||| | | | Sbjct 628 CAGCAAAGGCCACCAATCGCTCAGCAAAGCTTGCTACCTTCTCATCAAACCACCTCAGTG 687 Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314 |||| |||||||| | |||||||| | || || || ||||| || || | | | | Sbjct 688 CCCAGCTTGCCTTCTTGGTCACACAAGGGACAGTCTCAATAGCATTGAACAGCTTGCTCT 747 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAAT 42372 | ||| | | || || || ||| || |||| | ||| || || | ||| || || Sbjct 748 TCTCAGTGTTGTCCTTGACCAGTGTGTCAATCAGCAGAGAGTACACCTCGCTG--TGGAT 805 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||||||| || ||||| || |||||||| || | |||||| Sbjct 806 GTTTTCAATAGCAATCTGGAAGCCGTAGAAGCAGCGGGCCTC 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670958084697640