Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14304 93.3 1e-13 seq14303 93.3 1e-13 seq4375 93.3 1e-13 seq2369 91.5 3e-13 seq1251 91.5 3e-13 >seq14304 Length=4095 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395 ||| | || || ||||| | ||| | ||||| | |||||| || |||||| | || Sbjct 3755 CCTTTGAGACTCAGTACAATATGCAGCGTAGACCCAGTCTGAACATCATAGTCTAACAGT 3814 Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 |||||| | ||||| || ||| | |||||||| || |||||||||||||| || || || Sbjct 3815 GTTCTATCATCTTCAAGCTGTCTACCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATC 3874 Query 104456 CCTTCTTTATCCTGAATCT-TTGCTT 104480 |||||| ||| || | || |||||| Sbjct 3875 CCTTCTAGATCTTGTAGCTCTTGCTT 3900 >seq14303 Length=4115 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395 ||| | || || ||||| | ||| | ||||| | |||||| || |||||| | || Sbjct 3775 CCTTTGAGACTCAGTACAATATGCAGCGTAGACCCAGTCTGAACATCATAGTCTAACAGT 3834 Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 |||||| | ||||| || ||| | |||||||| || |||||||||||||| || || || Sbjct 3835 GTTCTATCATCTTCAAGCTGTCTACCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATC 3894 Query 104456 CCTTCTTTATCCTGAATCT-TTGCTT 104480 |||||| ||| || | || |||||| Sbjct 3895 CCTTCTAGATCTTGTAGCTCTTGCTT 3920 >seq4375 Length=1004 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || || ||||| || || | || || || || || || |||||||| Sbjct 32 TCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 91 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATT 104487 || || | ||| || ||||| || || || || || ||||||||||| ||| || || || Sbjct 92 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTT 150 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | || || || || || || || || || ||||| || || ||||| || || Sbjct 151 GTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTCTTGCCGGTCAGTGTCTTCAC 210 Query 104548 AAATATCTGCAT 104559 || |||||||| Sbjct 211 GAAGATCTGCAT 222 >seq2369 Length=1144 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| ||||||||||| ||||| | || || || || || || |||||||| Sbjct 320 TCCTTCTGAATGTTATAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 261 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATT 104487 || || | ||| || ||||| || || || || || ||||| ||||| ||| || || || Sbjct 260 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGNATCTTCTGC-TTCACGTT 202 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || | || || || || || || || || || ||||| ||||| || Sbjct 201 GTCAATAGTGTCAGATGGCTCAACATCAAGAGTGATGGTCTTGCCAGTCAG 151 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || |||||||| ||||| | || || || || || || ||||| || Sbjct 786 TCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 727 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATT 104487 || || | ||| || ||||| || || || || || ||||||||||| ||| || || || Sbjct 726 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTT 668 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || | || || || || || || || || || ||||| ||||| || Sbjct 667 GTCAATAGTGTCAGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTCAG 617 >seq1251 Length=1604 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || || || || ||||| | || || || || || || ||||| || Sbjct 1308 TCCTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 1367 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATT 104487 || || | ||| || ||||| || || || || || ||||||||||| ||| || || || Sbjct 1368 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTT 1426 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| || || || || || || || || || || || || ||||| || || Sbjct 1427 GTCGATGGTGTCAGATGGCTCAACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGAC 1486 Query 104548 AAATATCTGCAT 104559 ||| |||||||| Sbjct 1487 AAAGATCTGCAT 1498 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || ||||||||||| ||||| | || || || || || || |||||||| Sbjct 842 TCCTTCTGGATGTTATAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 901 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATT 104487 || || | ||| || ||||| || || || || || ||||||||||| ||| || || || Sbjct 902 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTT 960 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || | || || || || || || || || || ||||| ||||| || Sbjct 961 GTCAATAGTGTCAGATGGCTCAACATCAAGAGTGATGGTCTTGCCAGTCAG 1011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151079912768012