Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1251 96.9 3e-15 seq4375 84.2 2e-11 seq2369 82.4 6e-11 >seq1251 Length=1604 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | | ||| | || || ||||||||||| || ||||||||||| | | Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | ||||| |||||||| || || | || | ||||||||| || || Sbjct 1332 AGAGTG-CGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGG 1390 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| ||| |||||||| | | | || ||||| || | | ||| Sbjct 1391 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCG--ATGGTGTCAGATGGCTCA 1448 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || |||||||| ||||| || || || ||||| |||||||| Sbjct 1449 ACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 >seq4375 Length=1004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| || ||||||||||||| || | || | ||||| |||||| Sbjct 20 TGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCCTCAAGCTGC 79 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | ||||||||| || || | | ||||||||| ||| ||| Sbjct 80 TTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTC 139 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | | ||| || | || ||||| || ||||| Sbjct 140 TGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTCTTGCCGGTC 199 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| Sbjct 200 AGTGTCTTCACGAAGATCTGCAT 222 >seq2369 Length=1144 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 48498 AACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAG 48557 ||||||| || | | | ||| | || |||||||||||||| ||||||||||| |||| Sbjct 824 AACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAG 765 Query 48558 CCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 || | || || | ||||| |||||||| || || | || | ||||||||| || Sbjct 764 ACAGAGTG-CGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGT 706 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTT 48648 || | | ||||||||| ||| |||||||| Sbjct 705 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTT 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421140362095589