Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1251 116 3e-21 seq4375 98.7 9e-16 >seq1251 Length=1604 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| ||||| ||||| ||| ||||| || | ||| |||||| | Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||||| ||||| || || | ||||| | | ||||| || || || Sbjct 1332 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 1391 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||| || ||| ||| | ||| ||||||| | || || Sbjct 1392 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAACA 1451 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| ||||||||||| || || || || || |||||||||||||||| Sbjct 1452 TCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCATGC 1500 >seq4375 Length=1004 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||| ||||| || | ||| ||||| || ||| | | Sbjct 8 CGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCA 67 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | | ||||| || || || || || || ||| Sbjct 68 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 127 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | | | |||||||| | || || || | |||||| Sbjct 128 TCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATG 187 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || ||||| |||||||||||| || Sbjct 188 GTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATGATT 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448170223016040