Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16116 150 3e-32 seq18213 141 1e-29 seq4275 141 1e-29 seq4057 105 1e-18 seq4056 105 1e-18 seq4055 105 1e-18 seq11183 87.8 3e-13 >seq16116 Length=3209 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || ||||||||||| || ||||||||||||||||| Sbjct 1977 CGCNAAGCGTCACCGCAAGGTGCTCCGTGATAACATCCAGGGCATCACCAAGCCAGCTAT 2036 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||||| || || |||||||| ||||||||| || ||| | |||| || || | Sbjct 2037 CAGGCGTCTTGCACGCCGTGGTGGTGTCAAGCGTATCAGTGGCCTCATCTACGAGGAAAC 2096 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 2097 CCGTGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGA 2156 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||||||||| || | ||||| | ||||| || | || || || || Sbjct 2157 GCACGCTCGCCGTAAGACTGTGACTGCAATGGACGTTGTCTACGCCCTCAAGCGCCAGGG 2216 Query 16672 CCG 16674 ||| Sbjct 2217 CCG 2219 >seq18213 Length=2224 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || ||||||||||| ||||| |||||||| || Sbjct 2170 CGCCAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAAGGCATCACTAAGCCAGCCAT 2111 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | ||||| || ||||||||| || ||| | |||| || |||| Sbjct 2110 CAGGCGTCTGGCAAGGCGTGGAGGTGTCAAGCGTATCAGTGGCCTCATCTACGAGGAGAC 2051 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 2050 CCGTGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGA 1991 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||||||||| || | ||||| | ||||| || | || || || || Sbjct 1990 GCACGCTCGTCGTAAGACTGTGACTGCAATGGACGTTGTCTACGCCCTTAAGCGCCAGGG 1931 Query 16672 CCG 16674 ||| Sbjct 1930 CCG 1928 >seq4275 Length=2205 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || ||||||||||| ||||| |||||||| || Sbjct 55 CGCCAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAAGGCATCACTAAGCCAGCCAT 114 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | ||||| || ||||||||| || ||| | |||| || |||| Sbjct 115 CAGGCGTCTGGCAAGGCGTGGAGGTGTCAAGCGTATCAGTGGCCTCATCTACGAGGAGAC 174 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 175 CCGTGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGA 234 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||||||||| || | ||||| | ||||| || | || || || || Sbjct 235 GCACGCTCGCCGTAAGACTGTGACTGCAATGGACGTTGTCTACGCCCTCAAGCGCCAGGG 294 Query 16672 CCG 16674 ||| Sbjct 295 CCG 297 >seq4057 Length=908 Score = 105 bits (116), Expect = 1e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || ||||||||||| ||||| |||||||| || Sbjct 741 CGCCAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAAGGCATCACTAAGCCAGCCAT 800 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | ||||| || ||||||||| || ||| | |||| || |||| Sbjct 801 CAGGCGTCTGGCAAGGCGTGGAGGTGTCAAGCGTATCAGTGGCCTCATCTACGAGGAGAC 860 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 |||| ||| | ||| ||||||| ||| ||| |||| Sbjct 861 CCGTGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCC 898 >seq4056 Length=926 Score = 105 bits (116), Expect = 1e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || ||||||||||| ||||| |||||||| || Sbjct 746 CGCCAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAAGGCATCACTAAGCCAGCCAT 805 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | ||||| || ||||||||| || ||| | |||| || |||| Sbjct 806 CAGGCGTCTGGCAAGGCGTGGAGGTGTCAAGCGTATCAGTGGCCTCATCTACGAGGAGAC 865 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 866 CCGTGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGA 925 Query 16612 G 16612 | Sbjct 926 G 926 >seq4055 Length=913 Score = 105 bits (116), Expect = 1e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || ||||||||||| ||||| |||||||| || Sbjct 746 CGCCAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAAGGCATCACTAAGCCAGCCAT 805 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | ||||| || ||||||||| || ||| | |||| || |||| Sbjct 806 CAGGCGTCTGGCAAGGCGTGGAGGTGTCAAGCGTATCAGTGGCCTCATCTACGAGGAGAC 865 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 |||| ||| | ||| ||||||| ||| ||| |||| Sbjct 866 CCGTGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCC 903 >seq11183 Length=2460 Score = 87.8 bits (96), Expect = 3e-13 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 16502 GCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTT 16561 || || |||||||| ||||||||| || ||| | |||| || |||| |||| ||| Sbjct 1 GCACGCCGTGGTGGTGTCAAGCGTATCAGTGGCCTCATCTACGAGGAGACCCGTGGTGTG 60 Query 16562 TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAA 16621 | ||| ||||||| ||| ||| || | || || || ||| || ||||||||| Sbjct 61 CTCAAGGTCTTCCTTGAGAACGTCATTCGCGACTCTGTCACCTACACTGAGCACGCTCGC 120 Query 16622 CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||||||| || | ||||| | ||||| || | || || || ||||| Sbjct 121 CGTAAGACTGTGACTGCAATGGACGTTGTCTACGCCCTCAAGCGCCAGGGCCG 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79055461026177