Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq17042 100 4e-16 seq20382 95.1 2e-14 seq9502 87.8 2e-12 seq867 86.0 8e-12 >seq17042 Length=860 Score = 100 bits (110), Expect = 4e-16 Identities = 226/339 (67%), Gaps = 3/339 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||||||| || || | || || || || ||| || | || ||||| | || Sbjct 509 GTGCAGACCTTCATCACGGCTGATAAGCTCATTGCTGAAGCACAAGCCAGGCATCATACC 568 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || |||||||| || | | ||| ||| |||||||| ||||||||||| Sbjct 569 ACGCTTCTTGAGCCAAAAGATAGCACAGAAGCTGCCACTGAAGAAGATACCTTCTACTGC 628 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCACTTTTGAGC 33494 ||||||||| | | || ||| || | | | | | |||| | |||| | | || Sbjct 629 AGCAAAGGCCACCAATCGCTCAGCAAAGCTTGCTACCTTCTCATCAAACCACCTCAGTGC 688 Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554 ||| |||||||| | |||||||| | || || || ||||| || || | | | || Sbjct 689 CCAGCTTGCCTTCTTGGTCACACAAGGGACAGTCTCAATAGCATTGAACAGCTTGCTCTT 748 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 ||| | | || || || || || |||| ||| |||| || || ||||| Sbjct 749 CTCAGTGTTGTCCTTGACCAGTGTGTCAATCAGCAGAGAGTACACCTCGCTGTGGATGTT 808 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 |||||| || ||||| || |||||||| || | ||||| Sbjct 809 TTCAATAGCAATCTGGAAGCCGTAGAAGCAGCGGGCCTC 847 >seq20382 Length=10560 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 62942 TATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTT 63001 || |||||||||||| || || || | ||||||||| ||||| ||||| || |||||||| Sbjct 2995 TAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATAGTGCCTAAGTTTTGCTGGTTACTCTT 2936 Query 63002 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63048 |||| || |||||||| || || ||| | || || ||||| |||| Sbjct 2935 GCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAA 2889 >seq9502 Length=9919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 62942 TATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTT 63001 || |||||||||||| || || || | |||||| || ||||| || || || |||||||| Sbjct 7057 TAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTGGTTACTCTT 7116 Query 63002 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 63061 |||| || |||||||| || || ||| | || || ||||| |||| ||| |||| Sbjct 7117 GCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAACTTGACTCTCTAG 7176 Query 63062 AATCGCTTTCCAGACGACTCGAGCCTTTATT 63092 || || ||| || || | ||||| ||| Sbjct 7177 TATAGCAAACCACACTTCTTGTGCCTTAATT 7207 >seq867 Length=7666 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||||||||| || || || ||||||||||| || || || || || |||||||| || Sbjct 1141 ATCTCAGTGCACAGGTTGCTGCACTTGATAGTACCCAAGTTCTGCTGGTTACTCTTGCTG 1082 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63047 || || ||||||||| | || ||| | || ||||| || ||| Sbjct 1081 TTGCAGGCATCCTTAAATAGCATGTAGGGTGTACCTGTCTCA 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622779089911240