Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9502 107 5e-18 seq866 96.9 9e-15 seq13161 95.1 3e-14 seq13160 95.1 3e-14 seq13159 95.1 3e-14 seq20382 91.5 4e-13 seq867 89.7 1e-12 seq12022 84.2 6e-11 >seq9502 Length=9919 Score = 107 bits (118), Expect = 5e-18 Identities = 132/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 364074 GTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCAC-AGAAGCTATGGTTTGCCA 364132 |||||| | || || | ||| |||||||||||| |||| ||||| | |||||||| | Sbjct 7237 GTATGAGACCGAAGGCAGGGCCCGTAAGACAATTAAGGCACAAGAAG-TGTGGTTTGCTA 7179 Query 364133 TCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACC 364192 | | || || ||||||| || |||||||| ||| ||||||| ||| | |||||| Sbjct 7178 TACTAGAGAGTCAAGTTGAGACTGGCACACCCTACATGCTGTACAAGGATGCCTGCAACA 7119 Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGAT 364250 ||||| ||||||||| || | || ||||| || |||||||| || || ||||| Sbjct 7118 GCAAGAGTAACCAGCAGAACTTAGGCACAATCAAGAGCAGCAACCTCTGCACTGAGAT 7061 >seq866 Length=7643 Score = 96.9 bits (106), Expect = 9e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 || ||||||||||| |||| | || ||| || || | | | | ||| |||| Sbjct 987 GCCCGTAAGACAATCAAGGCACGTCAACTGTGGGAGGCTATACTAGTTGCACAGTGTGAG 1046 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || || |||||||| ||| ||| ||| ||| | |||||| ||||| |||||||||| || Sbjct 1047 ACTGGCACACCCTACATGCTGTTCAAGGATGCCTGCAACAGCAAGAGCAACCAGCAGAAC 1106 Query 364213 CTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||||| || || |||||| | || || |||||| |||| |||||| Sbjct 1107 CTGGGTACTATCAAGTGCAGCAACTTGTGCACTGAGATTGTTGAGTACACC 1157 >seq13161 Length=3939 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 111645 GCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAG 111704 |||||||| ||| || | || ||||||||| | |||||||||||| | | || ||| Sbjct 617 GCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCATGTCATATGTTCTGTCAG 558 Query 111705 TTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGT 111764 || ||||| | || | ||||| ||||||||||| || ||||||||| || Sbjct 557 TTCTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAACGTAGTGCTGATATGGGG 498 Query 111765 CTTGGTGTTCCGTTTAATATTGCAAGTTAC 111794 |||||||| || || |||||||| |||||| Sbjct 497 CTTGGTGTGCCATTCAATATTGCTAGTTAC 468 >seq13160 Length=3470 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 111645 GCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAG 111704 |||||||| ||| || | || ||||||||| | |||||||||||| | | || ||| Sbjct 1903 GCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCATGTCATATGTTCTGTCAG 1962 Query 111705 TTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGT 111764 || ||||| | || | ||||| ||||||||||| || ||||||||| || Sbjct 1963 TTCTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAACGTAGTGCTGATATGGGG 2022 Query 111765 CTTGGTGTTCCGTTTAATATTGCAAGTTAC 111794 |||||||| || || |||||||| |||||| Sbjct 2023 CTTGGTGTGCCATTCAATATTGCTAGTTAC 2052 >seq13159 Length=3473 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 111645 GCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAG 111704 |||||||| ||| || | || ||||||||| | |||||||||||| | | || ||| Sbjct 1903 GCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCATGTCATATGTTCTGTCAG 1962 Query 111705 TTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGT 111764 || ||||| | || | ||||| ||||||||||| || ||||||||| || Sbjct 1963 TTCTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAACGTAGTGCTGATATGGGG 2022 Query 111765 CTTGGTGTTCCGTTTAATATTGCAAGTTAC 111794 |||||||| || || |||||||| |||||| Sbjct 2023 CTTGGTGTGCCATTCAATATTGCTAGTTAC 2052 >seq20382 Length=10560 Score = 91.5 bits (100), Expect = 4e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 364093 GCTCGTAAGACAATTCCCGCAC-AGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 || |||||||||||| |||| ||||| | |||||||| || | || || |||| Sbjct 2834 GCCCGTAAGACAATTAAGGCACAAGAAG-TGTGGTTTGCTATACTTGAGAGTCAAGTTGA 2892 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCA 364211 ||| || |||||||| ||| ||||||| ||| | |||||| ||||| |||||||| | Sbjct 2893 GACTGGCACACCCTACATGCTGTACAAGGATGCCTGCAACAGCAAGAGTAACCAGCAAAA 2952 Query 364212 CCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGAT 364250 | | || || || || |||||||| || || ||||| Sbjct 2953 CTTAGGCACTATCAAGAGCAGCAACCTCTGCACTGAGAT 2991 >seq867 Length=7666 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 364059 TGCTC-TATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGA 364117 ||||| || || | | |||||| | || || || ||||||||||| |||| Sbjct 949 TGCTCGTACACAACAGGTATGAGACAGAAGGGCTTGCCCGTAAGACAATCAAGGCACGTC 1008 Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 | || ||| || || | | | | ||| ||||||||| |||||||| ||| | | | Sbjct 1009 AACTGTGGGAGGCTATACTAGTTGCACAGTGTGAGACAGGTACACCCTACATGCTATTTA 1068 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACC 364237 | ||| | |||||| ||||| ||||||||| || | ||||| || || ||||||| Sbjct 1069 AGGATGCCTGCAACAGCAAGAGTAACCAGCAGAACTTGGGTACTATCAAGTGCAGCAACC 1128 Query 364238 TATGTACCGAGATTATTGAATACACC 364263 | || || |||||| |||| |||||| Sbjct 1129 TGTGCACTGAGATTGTTGAGTACACC 1154 >seq12022 Length=1470 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 364132 ATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 ||| | ||| | |||||||||||||| || ||||| ||| ||||||| ||| | ||||| Sbjct 672 ATCCTAGATGCCCAGATTGAGACAGGCACCCCCTACATGATGTACAAGGATGCCTGCAAT 731 Query 364192 CGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATT 364251 | ||| |||||||||| || | || ||||| || |||||||| || ||| || Sbjct 732 GGGAAGAGCAACCAGCAGAACTTGGGCACAATCAAGAGCAGCAACCTGTGCTGTGAGGTT 791 Query 364252 ATTGAATACAC 364262 | || ||||| Sbjct 792 GTGGAGTACAC 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302993080582598