Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4375 105 4e-18 seq1251 96.9 2e-15 seq2369 82.4 5e-11 >seq4375 Length=1004 Score = 105 bits (116), Expect = 4e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 38099 CAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACG 38158 || ||||| ||||| || |||||||||||||| || || ||||||||||||| || Sbjct 4 CAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCG 63 Query 38159 TTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTC 38218 | || || | || || || ||||| || || || || || || | |||| ||| || Sbjct 64 GCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTC 123 Query 38219 TTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGT 38278 |||||| ||| || |||||||| || | | ||| || ||||| || | || Sbjct 124 CTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGT 183 Query 38279 AATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || || || |||| || |||||||| ||||||||| || Sbjct 184 GATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATGATT 226 >seq1251 Length=1604 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||||| ||||| || |||||||||||||| || || |||||||| ||| Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || || || || || || || || || | ||| Sbjct 1332 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 1391 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| || |||||||| || | || || || ||||| Sbjct 1392 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAACA 1451 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || ||||| || |||| || || || || ||||||||| Sbjct 1452 TCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCATG 1499 >seq2369 Length=1144 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||||| ||||| || |||||||||||||| ||||| || || |||||| Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || || || || || | ||| Sbjct 296 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 237 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 | ||| || |||||| || || |||||||| || Sbjct 236 ATGCCCTCCTTGTCCTGNATCTTCTGCTTCACGTT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334859070053459