Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1251 116 3e-21 seq4375 104 2e-17 seq2369 87.8 2e-12 >seq1251 Length=1604 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| ||| ||||||| | || || ||| | ||| Sbjct 1498 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATCT 1439 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||||| || || ||||| || || || ||||||||||| Sbjct 1438 GACACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 1379 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||||||||| Sbjct 1378 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAAC 1319 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || | ||||| Sbjct 1318 ATCCAGAAGGAGAGCACTCTGCACCTGGTGCT 1287 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 25018 CTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGA 25077 || |||| || || |||||||| | || || ||| | ||||||||||| || ||| Sbjct 530 CTCTGACTGGCAAGACCATCACACTGGATGTTGAGCCATCTGACACTATTGACAACGTGA 471 Query 25078 AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 |||| || ||| ||||| || || || ||||||||||| ||||| | || ||||| | Sbjct 470 AGCAGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 411 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 |||| || | || |||| |||||| || || ||||| ||||| || || ||| | Sbjct 410 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACAC 351 Query 25198 TACATTTAGTGCT 25210 | || | ||||| Sbjct 350 TGCACCTGGTGCT 338 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 25018 CTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGA 25077 || |||| || || ||||||| | || || ||| | ||||||||||| || ||| Sbjct 1013 CTCTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGA 954 Query 25078 AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 |||| || || ||||| || || || ||||||||||| ||||| | || ||||| | Sbjct 953 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 894 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 |||| || | || |||| |||||| || || || || || || || || ||| | Sbjct 893 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATCCAGAAGGAGAGCACAC 834 Query 25198 TACATTTAGTGCT 25210 | || | ||||| Sbjct 833 TGCACCTGGTGCT 821 >seq4375 Length=1004 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || || ||| | ||| Sbjct 222 ATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTGAGCCATCT 163 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||||| || || ||||| || || || ||||||||||| Sbjct 162 GACACTATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 103 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| ||||| || |||||||| Sbjct 102 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGATTACAAC 43 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || | ||||| Sbjct 42 ATCCAGAAGGAGAGCACTCTGCACCTGGTGCT 11 >seq2369 Length=1144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 25018 CTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGA 25077 || |||| || || ||||||| | || || ||| | ||||||||||| || ||| Sbjct 149 CTCTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGA 208 Query 25078 AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 |||| || || ||||| || || || ||||||||||| ||||| | || ||||| | Sbjct 209 AGCAGAAGATNCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 268 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 |||| || | || |||| |||||| || || || || ||||| || || ||| | Sbjct 269 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATTCAGAAGGAGAGCACTC 328 Query 25198 TACATTTAGTGCT 25210 | || | ||||| Sbjct 329 TGCACCTGGTGCT 341 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 25018 CTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGA 25077 || |||| || || ||||||| | || || ||| | ||||||||||| || ||| Sbjct 615 CTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCTGACACTATTGACAACGTGA 674 Query 25078 AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 |||| || || ||||| || || || ||||||||||| ||||| | || || || | Sbjct 675 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTG 734 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 |||| || | || |||| |||||| || || ||||| ||||| || || ||| | Sbjct 735 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACAC 794 Query 25198 TACATTTAGTGCT 25210 | || | ||||| Sbjct 795 TGCACCTGGTGCT 807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433213984497035