Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq17042 114 1e-20 >seq17042 Length=860 Score = 114 bits (126), Expect = 1e-20 Identities = 317/475 (67%), Gaps = 16/475 (3%) Strand=Plus/Plus Query 92793 AACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAA 92852 |||||||| || ||| || || ||| | ||||||||||| || ||||| |||| | Sbjct 194 AACACCACTCTTGCTGTACTCTCCTACTCTCTTTTCAAAGAAGTTCGTCTTGCCTTGTAG 253 Query 92853 AGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA 92910 || ||| || || | | || |||||| || ||| | ||| |||| | | | Sbjct 254 TGAGATCATATCCATCCAATCGAATGGATTAGATGCACCATACTGCTTATCACAGC-CTA 312 Query 92911 CTCGTA--CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTC 92968 | ||| || || ||| || |||||||| || |||||||| |||||| ||| ||| Sbjct 313 GT-GTAAGCAGTAGTCTGTCTGCTACAAACTCAATGTACTGGCACATCAGCCCACTGTTC 371 Query 92969 ATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCT 93028 || || | || ||||| ||||| || | ||| || ||||| || || || Sbjct 372 ATACCAATTAGCTCAACAGGCAGAGCACTTGTGATGAATTCCTTCTCAATCTTGACTGCA 431 Query 93029 TCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTG---TAC 93085 || | ||| | | ||||| || || | || |||| |||| ||| ||| Sbjct 432 TCACCAATGATAGCAACTACTCG-CTCTTGTG-GGAGCTTGTT-GACAAGCTTGCCATAC 488 Query 93086 ATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCATTGCTGA 93143 | || ||| |||||||| || || | |||||| || || ||||| | ||||||||||| Sbjct 489 AGTAGGCAGGCAAAGTCTGTGTGCAGACCTTCATCACGGCTGATA--AGCTCATTGCTGA 546 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | || || || | || || || |||||||||||||| || | | || || ||| Sbjct 547 AGCACAAGCCAGGCATCATACCACGCTTCTTGAGCCAAAAGATAGCACAGAAGCTGCCAC 606 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 || || |||||||| || || ||||| ||||| | || || ||||| |||| Sbjct 607 TGAAGAAGATACCTTCTACTGCAGCAAAGGCCACCAATCGCTCAGCAAAGCTTGC 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556710524152360