Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1251 125 6e-24 seq4375 107 2e-18 seq2369 93.3 4e-14 >seq1251 Length=1604 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| ||||| |||||||||| || || | | Sbjct 1498 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATCT 1439 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || ||||| ||||||||||| || ||||| || || Sbjct 1438 GACACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 1379 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | |||||||||||| Sbjct 1378 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAAC 1319 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||| | || | || |||| |||| ||||| Sbjct 1318 ATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCGTCTGCGTGGAGG 1272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || | | || || | ||| | | || || Sbjct 1008 ACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGAAGCAG 949 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || ||||| || || || ||||| || ||||| ||||| Sbjct 948 AAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGCAAG 889 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | || || || ||||| || || || ||| | || Sbjct 888 CAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATCCAGAAGGAGAGCACACTGCAC 829 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| |||| ||||| Sbjct 828 CTGGTGCTGCGTCTGCGTGGAGG 806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 || || || || || ||||||||||| || ||||| || || || ||||| || ||||| Sbjct 471 AAGCAGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCT 412 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||||| ||| | |||||| |||||| | || || ||||||||||| || || ||| Sbjct 411 GGCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACA 352 Query 22417 ATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 | || | || |||| | || ||||||| Sbjct 351 CTGCACCTGGTGCTGCGTCTTCGTGGAGGTT 321 >seq4375 Length=1004 Score = 107 bits (118), Expect = 2e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || ||||||| || || || | | Sbjct 222 ATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTGAGCCATCT 163 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || ||||| ||||||||||| || ||||| || || Sbjct 162 GACACTATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 103 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| |||||| | || ||||||||| Sbjct 102 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGATTACAAC 43 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 42 ATCCAGAAGGA 32 >seq2369 Length=1144 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || | | || || | ||| | | || || Sbjct 154 ACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGAAGCAG 213 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || ||||| || || || ||||| || ||||| ||||| Sbjct 214 AAGATNCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGCAAG 273 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | || || || |||||||| || || ||| | || Sbjct 274 CAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATTCAGAAGGAGAGCACTCTGCAC 333 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| |||| ||||| Sbjct 334 CTGGTGCTGCGTCTGCGTGGAGG 356 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||||| || || || | | || || | ||| | | || || Sbjct 620 ACTGGCAAGACCATCACTCTGGATGTTGAGCCATCTGACACTATTGACAACGTGAAGCAG 679 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 680 AAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTGGCAAG 739 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | || || ||||||||||| || || ||| | || Sbjct 740 CAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACACTGCAC 799 Query 22423 TTAGTTTTGCGATTGCGCGGAGGTT 22447 | || |||| | || ||||||| Sbjct 800 CTGGTGCTGCGTCTTCGTGGAGGTT 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419617562873785