Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13775 104 5e-17 seq8708 104 5e-17 seq17395 91.5 3e-13 seq13774 87.8 4e-12 >seq13775 Length=424 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 205 AGCCCGGGTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAG 264 Query 142563 CCCCACATCGGG 142574 |||||| ||||| Sbjct 265 CCCCACCTCGGG 276 >seq8708 Length=1216 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 951 AGCCCGGGTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAG 892 Query 142563 CCCCACATCGGG 142574 |||||| ||||| Sbjct 891 CCCCACCTCGGG 880 >seq17395 Length=8531 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 280692 GAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTC 280751 ||||| | || ||| | |||||| | | ||| || ||||| ||||||||||| | || Sbjct 7232 GAGTTCGCTACCCACACCCGCATTGGTGCTCTGTCAGGAGGGCAGAAGGTCAAGGTCGTG 7291 Query 280752 ATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTAT 280811 | | |||||| ||||| | || |||||| | | | || || ||||| || ||||| Sbjct 7292 CTGGCAGCAGCGATGTGGAACCAGCCTCACATCTTGATCCTTGATGAGCCAACTAACTAC 7351 Query 280812 CTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTC 280871 || ||| | ||| ||| || |||||| || ||| | || || || |||||| Sbjct 7352 CTTGACAGAGAGTCCCTTGGTGCTCTGGCTGGTGCCATTGAGGACTTCCAGGGAGGCGTC 7411 Query 280872 GTAGTCATTTCTCACAGCACAGAATTTGTCAAGTCTGTGT 280911 || |||| || |||| || || || |||| ||| |||| Sbjct 7412 GTCATCATCTCCCACAACAATGAGTTCGTCAGGTCAGTGT 7451 >seq13774 Length=1564 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||| Sbjct 205 AGCCCGGGTAGCTCAGTCGGTAGAGCGCACGACG-TTAATCGTGTGGTCGTGGGTTCGAG 263 Query 142563 CCCCACATCG 142572 |||||| ||| Sbjct 264 CCCCACCTCG 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027552491026349