Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1251 116 3e-21 seq4375 95.1 1e-14 seq2369 89.7 4e-13 seq18313 84.2 2e-11 >seq1251 Length=1604 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||||||| || ||| || ||| ||||| || || |||||| || Sbjct 1308 TCCTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 1367 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || |||||||| ||||| || || ||||| || ||||| |||||| || || | | Sbjct 1368 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 1427 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | | || || || | || | |||||||||||||| || || ||| Sbjct 1428 TCGATGGTGTCAGATGGCTCAACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACA 1487 Query 114372 AAAATCTGCATG 114383 || ||||||||| Sbjct 1488 AAGATCTGCATG 1499 >seq4375 Length=1004 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || ||||||||||| || || || ||| ||||| || || ||||| || Sbjct 32 TCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 91 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || |||||||| ||||| || || ||||| || ||||| |||||| || || | | Sbjct 92 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 151 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| ||||| | | || || || | || | || ||||||||||| || || || Sbjct 152 TCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTCTTGCCGGTCAGTGTCTTCACG 211 Query 114372 AAAATCTGCATG 114383 || ||||||||| Sbjct 212 AAGATCTGCATG 223 >seq2369 Length=1144 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| || || ||| || ||| ||||| || || |||||| || Sbjct 786 TCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 727 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || |||||||| ||||| || || ||||| || ||||| |||||| || || | | Sbjct 726 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 667 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAG 114363 |||| ||||| | | || || |||| || | || ||||| ||||||| Sbjct 666 TCAATAGTGTCAGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAG 615 >seq18313 Length=2265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||||||| ||| || ||| || || || || |||||| || Sbjct 2134 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAG 2193 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||||||||| || || || || ||||| || ||||| ||||| || || | | Sbjct 2194 ATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG 2253 Query 114312 TCAACGGTGTC 114322 |||| |||||| Sbjct 2254 TCAATGGTGTC 2264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420023855943468