Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12021 205 2e-47 seq12022 203 6e-47 seq17042 120 6e-22 seq866 100 5e-16 seq867 91.5 3e-13 seq9502 84.2 4e-11 >seq12021 Length=1470 Score = 205 bits (226), Expect = 2e-47 Identities = 266/365 (73%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTG 244741 ||||||||||||||||| || ||||||||||| | | ||||||||| |||| ||| | Sbjct 841 ACGCTGGCCAGGTTGCACACAGCCACCTCCTCTGCGCTGGTGTACTCCACAACCTCACAG 782 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 || || || |||| |||||| |||||||||| || || ||| ||| | ||||||||| Sbjct 781 CACAGATTGCTGCTCTTGATTGTGCCCAGGTTTTGCTGGTTGCTCTTCCCATTGCAGGCG 722 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAG 244861 |||||||| | |||| |||| || ||||| | ||| || | || | |||| ||| Sbjct 721 TCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTGAGCATCTAGTATTCTGTACCAC 662 Query 244862 AGGTCCCTAGCCTTGACCGTCCTGCG---AGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 || || || || | || | ||| | |||||||||||| |||||||| |||||| Sbjct 661 AGATCTTGAG-CTCGCACG--CGGCGCACAAACTTGCCCTCTGCTTCGTAGCGAGTGTAC 605 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATG 244978 || ||||||||||| ||||||| || | || || |||||| |||||||| Sbjct 604 AGCGCCTCGAACTCTTTGCCCCAGCAGTCTGCAAGCCCAGGGCACTGGTGTGGGCACATC 545 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 | | ||| || ||| | | | || | ||||||||||||||| |||||||| ||| | Sbjct 544 AAGCACCAGTCTCCGTCTGCTTCTACGCGCTGCATGAAGAGGTCTGGGATCCACAGGCCG 485 Query 245039 TGGAA 245043 | ||| Sbjct 484 TAGAA 480 >seq12022 Length=1470 Score = 203 bits (224), Expect = 6e-47 Identities = 279/385 (72%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 244661 CTCACAAACTCGTTG-AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTT 244719 ||||||||| || | || | ||||||||||||||||| || ||||||||||| | | | Sbjct 862 CTCACAAAC-CGCGGCAGCACAACGCTGGCCAGGTTGCACACAGCCACCTCCTCTGCGCT 804 Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 ||||||| |||| ||| ||| ||||| |||| |||||| ||||||| || ||| || Sbjct 803 AGTGTACTCCACAACCTCACAGCACAGGTTGCTGCTCTTGATTGTGCCCAAGTTCTGCTG 744 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||| ||| | |||||||| |||||||| | |||| |||| || ||||| | ||| Sbjct 743 GTTGCTCTTCCCATTGCAGGCATCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTG 684 Query 244840 GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGAC-CGTCCTGCGAGCCTTGCCCT 244898 ||| | |||| |||| ||| | |||| ||| | || || | | | |||||||| Sbjct 683 GGCATCTAGGATCCTGTACCACAAGTCCTGAGCTCTCACGCGGCGCAC-AAACTTGCCCT 625 Query 244899 CTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGG 244958 |||| |||||||| |||||||| | ||||| || ||||||| || | || || | Sbjct 624 CTGCTTCGTAGCGAGTGTACAGCTCTTCGAAATCTTTGCCCCAGCAGTCTGCAAGCCCAG 565 Query 244959 GGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 ||||| |||||||| | | ||| || ||| | | | || | ||||||||||| Sbjct 564 GGCACTGGTGTGGGCACATCAAGCACCAGTCTCCGTCTGCTTCTACGCGCTGCATGAAGA 505 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAA 245043 |||| |||||||| ||| | | ||| Sbjct 504 GGTCTGGGATCCACAGGCCGTAGAA 480 >seq17042 Length=860 Score = 120 bits (132), Expect = 6e-22 Identities = 349/526 (66%), Gaps = 11/526 (2%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| ||||||||||||||||||||||| || || || ||| | ||| ||||||||| Sbjct 847 GAGGCCCGCTGCTTCTACGGCTTCCAGATTGCTATTGAAAACATCCACAGCGAGGTGTAC 788 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||| | |||| || ||| | ||| | | ||||||||| || Sbjct 787 TCTCTGCTGATTGACACACTGGTCAAGGACAACACTGAGAAGAGCAAGCTGTTCAATGCT 728 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-GAG 42679 || ||||| | || || | | |||||||| |||||| || | ||| | || ||| Sbjct 727 ATTGAGACTGTCCCTTGTGTGACCAAGAAGGCAAGCTGGGCACTGAGGTGGTTTGATGAG 668 Query 42680 TCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTT 42739 | |||| || | ||| | |||| |||||| | || || || || |||||||| Sbjct 667 AAGGTA-GCAAGCTTTGCTGAGCGATTGGTGGCCTTTGCTGCAGTAGAAGGTATCTTCTT 609 Query 42740 CTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCA 42798 | ||| |||| | ||||| ||||||||| || ||| | |||||| || | Sbjct 608 CAGTGGCAGCTTCTGTGCTATCTTTTGGCTCAAGAAGCGTGGTAT-GATGCCTGGCTTGT 550 Query 42799 CCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCC 42858 |||| || || || |||||| | || || || ||||| | |||||||||||||| | Sbjct 549 GCTTCAGCAATGAGCTTATCAGCCGTGATGAAGGTCTGCACACAGACTTTGCCTGCCTAC 490 Query 42859 TGT-TCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG 42917 ||| | | || | ||| |||||| | | | ||||| || || ||||| Sbjct 489 TGTATGGCAAG-CTTGTCA---ACAAGCTCCCACAAGAGCGAGTAGTTGCTATCATTGGT 434 Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT-CGCTGCCCGTGTCCCTGGTCGG 42976 || || || |||| |||||||| ||| |||| ||| | ||||| || || | || Sbjct 433 GATGCAGTCAAGATTGAGAAGGAATTCATCAC-AAGTGCTCTGCCTGTTGAGCTAATTGG 375 Query 42977 CATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 |||||| | || |||||| ||||||| ||| || || ||| Sbjct 374 TATGAACAGTGGGCTGATGTGCCAGTACATTGAGTTTGTAGCAGAC 329 >seq866 Length=7643 Score = 100 bits (110), Expect = 5e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| |||||||| ||||| | ||| ||||||||||| || ||||||| ||| | Sbjct 1158 TGGTGTACTCAACAATCTCAGTGCACAAGTTGCTGCACTTGATAGTACCCAGGTTCTGCT 1099 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 | ||| |||| ||||||||| |||||| | |||||| |||| Sbjct 1098 GGTTGCTCTTGCTGTTGCAGGCATCCTTGAACAGCATGTAGGG 1056 >seq867 Length=7666 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| |||||||| ||||| ||||| ||||||||||| || |||| || ||| | Sbjct 1155 TGGTGTACTCAACAATCTCAGTGCACAGGTTGCTGCACTTGATAGTACCCAAGTTCTGCT 1096 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 | || |||| ||||||||| ||||| | |||||| |||| Sbjct 1095 GGTTACTCTTGCTGTTGCAGGCATCCTTAAATAGCATGTAGGG 1053 >seq9502 Length=9919 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 244733 ATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG 244792 ||||| ||||||||||| |||| |||||| ||||| | || ||| || || |||| | Sbjct 7061 ATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTGGTTACTCTTGCTG 7120 Query 244793 TTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 |||||||| |||||||| |||||| |||| Sbjct 7121 TTGCAGGCATCCTTGTACAGCATGTAGGG 7149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944084358262640