Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4375 107 2e-18 seq1251 107 2e-18 seq2369 100 2e-16 seq18313 87.8 1e-12 seq18312 87.8 1e-12 >seq4375 Length=1004 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 33909 CAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCG 33968 ||| ||||||||||| || || |||||||||||||| ||||||||||| | || | || Sbjct 4 CAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCG 63 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | |||||||| ||||| ||||| |||||||| || || | || ||| Sbjct 64 GCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTC 123 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| || ||||| | | | | | |||| | || || | || Sbjct 124 CTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGT 183 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| ||||| ||||| ||||| ||||| Sbjct 184 GATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq1251 Length=1604 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| ||||||||||| || || |||||||||||||| ||||||||||| | | Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | |||||||| || || ||||| |||||||| || || Sbjct 1332 AGAGTG-CGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGG 1390 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||| |||||| ||| || ||||| | | | | |||| | || Sbjct 1391 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAAC 1450 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || ||||| ||||| ||||| || |||||||| ||||| Sbjct 1451 ATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 100 bits (110), Expect = 2e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 ||||||| | || ||||||||||| || || ||||||||||||||||||||||| || | Sbjct 321 AACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAG 380 Query 33959 CCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 || | || || | || || | |||||||| ||||| ||||| |||||||| || Sbjct 381 ACAGAGTG-CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGT 439 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 || | || ||| |||||| || || ||||| Sbjct 440 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| ||||||||||| || || |||||||||||||| ||||| || || | | Sbjct 806 CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGAC 865 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | |||||||| ||||| ||||| |||||||| || || Sbjct 866 AGAGTG-CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 924 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 925 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 954 >seq2369 Length=1144 Score = 100 bits (110), Expect = 2e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 ||||||| | || ||||||||||| || || ||||||||||||||||||||||| || | Sbjct 824 AACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAG 765 Query 33959 CCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 || | || || | || || | |||||||| || || ||||| |||||||| || Sbjct 764 ACAGAGTG-CGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGT 706 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 || | || ||| |||||| ||| || ||||| Sbjct 705 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTT 674 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| ||||||||||| || || |||||||||||||||||||| || || | | Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | |||||||| ||||| ||||| |||||||| || || Sbjct 296 AGAGTG-CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 238 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 237 GATGCCCTCCTTGTCCTGNATCTTCTGCTT 208 >seq18313 Length=2265 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 ||||||| | || ||||||||||| || || |||||||||||||| |||||||| || Sbjct 2096 AACCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 2155 Query 33959 CCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 || | || || | || || | |||||||| || || || || ||||||||||| Sbjct 2156 TCAGAGTG-CGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGG 2214 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 || | || ||| |||||| || || ||||| Sbjct 2215 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 2246 >seq18312 Length=2245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 ||||||| | || ||||||||||| || || |||||||||||||| |||||||| || Sbjct 2091 AACCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 2150 Query 33959 CCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 || | || || | || || | |||||||| || || || || ||||||||||| Sbjct 2151 TCAGAGTG-CGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGG 2209 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 || | || ||| |||||| || || ||||| Sbjct 2210 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 2241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396957926554378