Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4375 114 3e-20 seq1251 113 1e-19 seq2369 93.3 1e-13 >seq4375 Length=1004 Score = 114 bits (126), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || || || | || ||||| || || || | || || || Sbjct 26 GTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCCTCAAGCTGCTTGCCA 85 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || |||||||||||||| || | |||||| || || || ||||| || ||| ||| Sbjct 86 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTC 145 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 ||||| || |||| || | || || || || ||||| ||||| |||||||| ||| Sbjct 146 ACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTCTTGCCGGTCAGTGTC 205 Query 288457 TTGACGAATATCTGCATTAT 288476 || ||||| |||||||| || Sbjct 206 TTCACGAAGATCTGCATGAT 225 >seq1251 Length=1604 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || || || | ||||| || || ||||| || || | Sbjct 1268 CATG-CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAAT 1326 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || || || | || || || ||||||||||||||||| || | Sbjct 1327 CGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 1386 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || || || ||||| || ||| |||||||| || || | || | | Sbjct 1387 GTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCT 1446 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| || || |||||||| |||||||| || |||||||| Sbjct 1447 CAACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 96.9 bits (106), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || || || | ||||| || || ||||| ||||||| Sbjct 802 CATG-CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGT 860 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || || || | || || || || |||||||||||||| || | Sbjct 861 CAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAG 920 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || || || ||||| || ||| |||||||| || |||| || | | Sbjct 921 GTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCT 980 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454 | || || || ||||| ||||| || ||||||| Sbjct 981 CAACATCAAGAGTGATGGTCTTGCCAGTCAGAG 1013 Score = 91.5 bits (100), Expect = 3e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || || || || ||||| | || ||||| || || || | || || || Sbjct 353 GTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 412 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || |||||||||||||| || | |||||| || || || |||||||| ||| ||| Sbjct 413 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 472 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454 ||||| || |||| || | || || || || ||||| ||||| || ||||||| Sbjct 473 ACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGTGTGATGGTCTTGCCAGTCAGAG 530 >seq2369 Length=1144 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || || || | ||||| || || || || ||||||| Sbjct 360 CATG-CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGT 302 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || || || | || || || || |||||||||||||| || | Sbjct 301 CAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAG 242 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || || || ||||| || ||| |||||||| || |||| || | | Sbjct 241 GTGGGATGCCCTCCTTGTCCTGNATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCT 182 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454 | || || || ||||| ||||| || ||||||| Sbjct 181 CAACATCAAGAGTGATGGTCTTGCCAGTCAGAG 149 Score = 91.5 bits (100), Expect = 3e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || || || || ||||| | || ||||| || || || | || || || Sbjct 792 GTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 733 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||||||||||||||| || | |||||| || || || ||||| || ||| ||| Sbjct 732 GCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTC 673 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454 ||||| || |||| || | || || || || ||||| ||||| || ||||||| Sbjct 672 ACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAG 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179328096902342