Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1251 147 2e-30 seq4375 132 5e-26 seq2369 129 6e-25 seq18313 107 2e-18 seq18312 107 2e-18 seq1250 82.4 8e-11 >seq1251 Length=1604 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| ||||| |||| ||||||||||| || || |||||||| | | Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| |||||||| || || ||||||||||| | ||| Sbjct 1332 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 1391 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| || || || || | ||| | | | ||||| | || || Sbjct 1392 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATGGTGTCAGATGGCTCAAC 1450 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| | |||||||||||||| || || ||||| |||||||| ||||| Sbjct 1451 ATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 129 bits (142), Expect = 6e-25 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| ||||| |||| |||||||||||| ||||| ||||| |||| Sbjct 322 ACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGA 381 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| ||||| || || || ||||||||||| | ||| Sbjct 382 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 441 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| || || || | ||| | | | ||||| | || | Sbjct 442 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAA 500 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAG 42187 |||| | |||||||| ||||| || || Sbjct 501 CATCCAGTGTGATGGTCTTGCCAGTCAG 528 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| ||||| |||| |||||||||||| || || || || |||| | Sbjct 806 CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGAC 865 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| ||||| || || || ||||||||||| | ||| Sbjct 866 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 925 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| || || || || | ||| | | | ||||| | || || Sbjct 926 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAAC 984 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAG 42187 ||| | |||||||| ||||| || || Sbjct 985 ATCAAGAGTGATGGTCTTGCCAGTCAG 1011 >seq4375 Length=1004 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| ||||||||||| || || |||||||||| ||| || || | Sbjct 7 ACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCC 66 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || || ||||||||||| | ||| | || |||||| Sbjct 67 ATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTT 126 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | ||||| | || ||||| | |||| Sbjct 127 GTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGA 185 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| || ||||| ||||| Sbjct 186 TGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq2369 Length=1144 Score = 129 bits (142), Expect = 6e-25 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| ||||| |||| |||||||||||| ||||| ||||| |||| Sbjct 823 ACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGA 764 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| |||||||| || || ||||||||||| | ||| Sbjct 763 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGG 704 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| || || || || | ||| | | | ||||| | || | Sbjct 703 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAA 645 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAG 42187 |||| | |||||||| ||||| || || Sbjct 644 CATCCAGAGTGATGGTCTTGCCAGTCAG 617 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| ||||| |||| ||||||||||| ||||| || || |||| | Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| ||||| || || || ||||||||||| | ||| Sbjct 296 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 237 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| || || || || | ||| | | | ||||| | || || Sbjct 236 ATGCCCTCCTTGTCCTGNATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAAC 178 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAG 42187 ||| | |||||||| ||||| || || Sbjct 177 ATCAAGAGTGATGGTCTTGCCAGTCAG 151 >seq18313 Length=2265 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| ||||| |||| ||||||||||| || || ||||| || Sbjct 2097 ACCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 2156 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| |||||||| ||||| |||||||| || | || Sbjct 2157 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 2216 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGA 42132 | || |||||||||| ||| || || |||| Sbjct 2217 GATGCCCTCCTTGTCCTGGATCTTCTGCTTGA 2248 >seq18312 Length=2245 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| ||||| |||| ||||||||||| || || ||||| || Sbjct 2092 ACCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 2151 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| |||||||| ||||| |||||||| || | || Sbjct 2152 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 2211 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGA 42132 | || |||||||||| ||| || || |||| Sbjct 2212 GATGCCCTCCTTGTCCTGGATCTTCTGCTTGA 2243 >seq1250 Length=2728 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| ||||| |||| |||||||||||| ||||| ||||| |||| Sbjct 93 ACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGA 34 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGC 42073 |||||| || | || || |||||||| ||||| Sbjct 33 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543066207235760