Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4375 102 8e-17 seq1251 87.8 2e-12 >seq4375 Length=1004 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || ||||||||||| | | ||||| | || |||||||||||||| ||| | Sbjct 32 TCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 91 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| || || || || || || || || || || ||||| || Sbjct 92 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 151 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | || || || | ||| | |||||||||||||| || || ||| Sbjct 152 TCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTCTTGCCGGTCAGTGTCTTCACG 211 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 212 AAGATCTGCAT 222 >seq1251 Length=1604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || ||||||||||| | | ||||| | || |||||||||||||| || | Sbjct 1308 TCCTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 1367 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| || || || || || || || || || || ||||| || Sbjct 1368 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 1427 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | || || || | ||| | ||| |||||||||| || || || Sbjct 1428 TCGATGGTGTCAGATGGCTCAACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACA 1487 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 1488 AAGATCTGCAT 1498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499509964605160