Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq869 100 3e-16 seq868 100 3e-16 seq867 100 3e-16 seq866 100 3e-16 >seq869 Length=5680 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 94153 CAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 ||||| ||||| | | | ||||| || || || || || || ||||||||||| || ||| Sbjct 671 CAGGGAGGTGGTAAGCGTAAGGGGTCATTTGCAGTGTACCTTGAGCCCTGGCATGCAGAC 612 Query 94213 GTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGAC 94272 | || ||| | |||||||| |||||||||||||| || || ||| | || | || Sbjct 611 ATATTTGCCTTCCTTGACCTGCGCAAGAACCACGGCAATGAGCTTGAGCGTGCACGTGAT 552 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAA 94322 |||||||| | || ||| | || ||||| || ||| | | || ||||| Sbjct 551 CTCTTCTATGGCCTGTGGATACCTGACCTGTTCATGCACAGAGTTGAGAA 502 >seq868 Length=5831 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 94153 CAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 ||||| ||||| | | | ||||| || || || || || || ||||||||||| || ||| Sbjct 671 CAGGGAGGTGGTAAGCGTAAGGGGTCATTTGCAGTGTACCTTGAGCCCTGGCATGCAGAC 612 Query 94213 GTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGAC 94272 | || ||| | |||||||| |||||||||||||| || || ||| | || | || Sbjct 611 ATATTTGCCTTCCTTGACCTGCGCAAGAACCACGGCAATGAGCTTGAGCGTGCACGTGAT 552 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAA 94322 |||||||| | || ||| | || ||||| || ||| | | || ||||| Sbjct 551 CTCTTCTATGGCCTGTGGATACCTGACCTGTTCATGCACAGAGTTGAGAA 502 >seq867 Length=7666 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 94153 CAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 ||||| ||||| | | | ||||| || || || || || || ||||||||||| || ||| Sbjct 185 CAGGGAGGTGGTAAGCGTAAGGGGTCATTTGCAGTGTACCTTGAGCCCTGGCATGCAGAC 244 Query 94213 GTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGAC 94272 | || ||| | |||||||| |||||||||||||| || || ||| | || | || Sbjct 245 ATATTTGCCTTCCTTGACCTGCGCAAGAACCACGGCAATGAGCTTGAGCGTGCACGTGAT 304 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAA 94322 |||||||| | || ||| | || ||||| || ||| | | || ||||| Sbjct 305 CTCTTCTATGGCCTGTGGATACCTGACCTGTTCATGCACAGAGTTGAGAA 354 >seq866 Length=7643 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 94153 CAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 ||||| ||||| | | | ||||| || || || || || || ||||||||||| || ||| Sbjct 185 CAGGGAGGTGGTAAGCGTAAGGGGTCATTTGCAGTGTACCTTGAGCCCTGGCATGCAGAC 244 Query 94213 GTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGAC 94272 | || ||| | |||||||| |||||||||||||| || || ||| | || | || Sbjct 245 ATATTTGCCTTCCTTGACCTGCGCAAGAACCACGGCAATGAGCTTGAGCGTGCACGTGAT 304 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAA 94322 |||||||| | || ||| | || ||||| || ||| | | || ||||| Sbjct 305 CTCTTCTATGGCCTGTGGATACCTGACCTGTTCATGCACAGAGTTGAGAA 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494589692760440