Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1251 132 5e-26 seq4375 105 6e-18 seq18313 104 2e-17 seq18312 98.7 9e-16 seq2369 91.5 1e-13 seq20382 82.4 7e-11 >seq1251 Length=1604 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||| || || || ||||||||| || ||||| | Sbjct 1284 CGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGACAGAGTGCGGCCA 1343 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| |||||||| || || || |||||||||||| Sbjct 1344 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 1403 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || |||||||| | |||| |||| |||||| | ||| || || | || | Sbjct 1404 TCCTGAATCTTCTGCTTCACGTTG-TCGATGGTGTCAGATGGCTCAACATCAAGAGTGAT 1462 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||||||||||| || || ||||| ||||||||| Sbjct 1463 GGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCATG 1499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||| || ||||| ||||| || || ||||| | Sbjct 335 CGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCA 394 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| |||||||| || || || |||||||||||| Sbjct 395 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 454 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| |||||||| | |||| || | ||||| | ||| || || | || | Sbjct 455 TCCTGGATCTTCTGCTTCACGTTG-TCAATAGTGTCAGATGGCTCAACATCCAGTGTGAT 513 Query 127078 CGTTTTGCCGGTCAGAG 127094 || ||||| ||||||| Sbjct 514 GGTCTTGCCAGTCAGAG 530 >seq4375 Length=1004 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||| || || || |||||||| || ||||| | Sbjct 8 CGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCA 67 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| |||||||| || || || |||||||||||| Sbjct 68 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 127 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || |||||||| | |||| || | ||||| | ||| || || | || | Sbjct 128 TCCTGAATCTTCTGCTTCACGTTG-TCAATAGTGTCAGATGGCTCAACATCNAGAGTGAT 186 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||||||||| || || || || ||||||||| Sbjct 187 GGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATG 223 >seq18313 Length=2265 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||| || || || ||||| |||| || ||||| | Sbjct 2110 CGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCA 2169 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||| | ||||||||||| || || |||||||||||| Sbjct 2170 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTG 2229 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTC 127053 ||| ||| |||||||||| |||| || | |||||| Sbjct 2230 TCCTGGATCTTCTGCTTGACGTTG-TCAATGGTGTC 2264 >seq18312 Length=2245 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||| || || || ||||| |||| || ||||| | Sbjct 2105 CGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCA 2164 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||| | ||||||||||| || || |||||||||||| Sbjct 2165 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTG 2224 Query 127019 TCCGTGATTTTCTGCTTGA 127037 ||| ||| |||||||||| Sbjct 2225 TCCTGGATCTTCTGCTTGA 2243 >seq2369 Length=1144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||| || ||||| ||||| || || ||||| | Sbjct 810 CGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCA 751 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| |||||||| || || || |||||||||||| Sbjct 750 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 691 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || |||||||| | |||| || | ||||| | ||| || || | || | Sbjct 690 TCCTGAATCTTCTGCTTCACGTTG-TCAATAGTGTCAGATGGCTCAACATCCAGAGTGAT 632 Query 127078 CGTTTTGCCGGTCAGAG 127094 || ||||| ||||||| Sbjct 631 GGTCTTGCCAGTCAGAG 615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||| || ||||| || || || || ||||| | Sbjct 344 CGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGACAGAGTGCGGCCA 285 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| |||||||| || || || |||||||||||| Sbjct 284 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 225 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || |||||||| | |||| || | ||||| | ||| || || | || | Sbjct 224 TCCTGNATCTTCTGCTTCACGTTG-TCAATAGTGTCAGATGGCTCAACATCAAGAGTGAT 166 Query 127078 CGTTTTGCCGGTCAGAG 127094 || ||||| ||||||| Sbjct 165 GGTCTTGCCAGTCAGAG 149 >seq20382 Length=10560 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 146689 ATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG 146748 ||||| | |||||||||||||| |||||| |||| || |||| |||||||| || Sbjct 2991 ATCTCAGTGCAGAGGTTGCTGCTCTTGATAGTGCCTAAGTTTTGCTGGTTACTCTTGCTG 2932 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGGT 146778 ||||||| |||||||| |||||||| ||| Sbjct 2931 TTGCAGGCATCCTTGTACAGCATGTAGGGT 2902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475372480165360