Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq13161 87.8 2e-12 seq13160 87.8 2e-12 seq13159 87.8 2e-12 >seq13161 Length=3939 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 140222 GCAATGTTGAATGGCAATCCCAAGAAAACATCTACACTTCTTTGGTACCATTGTAAATCA 140281 ||||| |||||||||| || | | ||| |||| | ||| ||| ||| | || | Sbjct 475 GCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTG-ACATGA 533 Query 140282 AGATA-ACCATTACGCACATTAAACTGATAGAACATATGACAGGGCGGTAATGCCATTTG 140340 || ||||||| |||| |||||| ||||||||||||| || || |||||||||| Sbjct 534 CAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCCATTTT 593 Query 140341 ATTGATTTCAGCTGGATTCCATGCTGAAACGATTTGACGTCGATC 140385 || | |||| ||||||||||||||| || || ||||| ||| Sbjct 594 ATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATC 638 >seq13160 Length=3470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 140222 GCAATGTTGAATGGCAATCCCAAGAAAACATCTACACTTCTTTGGTACCATTGTAAATCA 140281 ||||| |||||||||| || | | ||| |||| | ||| ||| ||| | || | Sbjct 2045 GCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTG-ACATGA 1987 Query 140282 AGATA-ACCATTACGCACATTAAACTGATAGAACATATGACAGGGCGGTAATGCCATTTG 140340 || ||||||| |||| |||||| ||||||||||||| || || |||||||||| Sbjct 1986 CAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCCATTTT 1927 Query 140341 ATTGATTTCAGCTGGATTCCATGCTGAAACGATTTGACGTCGATC 140385 || | |||| ||||||||||||||| || || ||||| ||| Sbjct 1926 ATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATC 1882 >seq13159 Length=3473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 140222 GCAATGTTGAATGGCAATCCCAAGAAAACATCTACACTTCTTTGGTACCATTGTAAATCA 140281 ||||| |||||||||| || | | ||| |||| | ||| ||| ||| | || | Sbjct 2045 GCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTG-ACATGA 1987 Query 140282 AGATA-ACCATTACGCACATTAAACTGATAGAACATATGACAGGGCGGTAATGCCATTTG 140340 || ||||||| |||| |||||| ||||||||||||| || || |||||||||| Sbjct 1986 CAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCCATTTT 1927 Query 140341 ATTGATTTCAGCTGGATTCCATGCTGAAACGATTTGACGTCGATC 140385 || | |||| ||||||||||||||| || || ||||| ||| Sbjct 1926 ATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATC 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529101976675160