Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1251 165 9e-36 seq2369 141 1e-28 seq4375 138 1e-27 seq18313 123 3e-23 seq18312 123 3e-23 >seq1251 Length=1604 Score = 165 bits (182), Expect = 9e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| |||||| |||| || |||||||| ||||| ||||| |||| Sbjct 1270 TGCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGG 1329 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| ||||| |||| ||||||||||| | | Sbjct 1330 ACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTG 1389 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| ||||||| ||| | ||| | | | ||||| | || Sbjct 1390 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATGGTGTCAGATGGCTCA 1448 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| | |||||||||||||| ||||| || || |||||||| ||||| Sbjct 1449 ACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 141 bits (156), Expect = 1e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||||| |||| ||| |||||||| || || |||||||| || Sbjct 323 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 382 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || |||| ||||||||||| | || Sbjct 383 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 442 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| |||||||| ||| | ||| | | | ||||| | || || Sbjct 443 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAAC 501 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAG 46572 ||||| |||||||| ||||| ||||| Sbjct 502 ATCCAGTGTGATGGTCTTGCCAGTCAG 528 Score = 136 bits (150), Expect = 4e-27 Identities = 157/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| |||||| |||| ||| |||||||| ||||| || ||||| | Sbjct 804 TGCCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAG 863 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| || || |||| ||||||||||| | | Sbjct 864 ACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTG 923 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| ||||||| ||| | ||| | | | ||||| | || Sbjct 924 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCA 982 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAG 46572 ||||| | |||||||| ||||| ||||| Sbjct 983 ACATCAAGAGTGATGGTCTTGCCAGTCAG 1011 >seq2369 Length=1144 Score = 141 bits (156), Expect = 1e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||||| |||| ||| |||||||| || || |||||||| || Sbjct 822 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 763 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| ||||| |||| ||||||||||| | || Sbjct 762 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 703 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| ||||||| ||| | ||| | | | ||||| | || || Sbjct 702 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAAC 644 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAG 46572 ||||| |||||||| ||||| ||||| Sbjct 643 ATCCAGAGTGATGGTCTTGCCAGTCAG 617 Score = 127 bits (140), Expect = 2e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| |||||| |||| || |||||||| || || || ||||| | Sbjct 358 TGCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAG 299 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| || || |||| ||||||||||| | | Sbjct 298 ACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTG 239 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| ||||||| ||| | ||| | | | ||||| | || Sbjct 238 GGATGCCCTCCTTGTCCTGNATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCA 180 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAG 46572 ||||| | |||||||| ||||| ||||| Sbjct 179 ACATCAAGAGTGATGGTCTTGCCAGTCAG 151 >seq4375 Length=1004 Score = 138 bits (152), Expect = 1e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||||| ||||| ||||| || || || ||||| | Sbjct 7 ACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCC 66 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| || || |||| ||||||||||| | || | || |||||| Sbjct 67 ATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTT 126 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||||| ||| | ||| | | | ||||| | || ||||| | |||| Sbjct 127 GTCCTGAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGA 185 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || || || ||||| ||||| Sbjct 186 TGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq18313 Length=2265 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||||| |||| || |||||||| ||||| ||||||||| Sbjct 2098 CCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 2157 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || |||||||||||||| ||||| || | |||||||| || | || Sbjct 2158 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 2217 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | || |||||||||| |||||||| ||||| Sbjct 2218 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA 2248 >seq18312 Length=2245 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||||| |||| || |||||||| ||||| ||||||||| Sbjct 2093 CCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 2152 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || |||||||||||||| ||||| || | |||||||| || | || Sbjct 2153 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 2212 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | || |||||||||| |||||||| ||||| Sbjct 2213 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA 2243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565085863352280