Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1251 113 5e-20 seq18313 102 8e-17 seq18312 102 8e-17 seq4375 96.9 3e-15 seq2369 84.2 2e-11 >seq1251 Length=1604 Score = 113 bits (124), Expect = 5e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || |||||||||||||| | || || ||| | | Sbjct 1498 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATCT 1439 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || || | ||||| Sbjct 1438 GACACCATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 1380 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || || | ||||| || ||| ||||| Sbjct 1379 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAA 1320 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| ||| || ||||| ||||||||||| || | || ||| Sbjct 1319 CATCCAGAAGGAGAGC-ACTCTGCACCTGGTGCTGCGTCTGCGTGGAGGC 1271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || ||||| |||||||| | || || ||| | | |||| | | |||| | || Sbjct 528 CTGACTGGCAAGACCATCACACTGGATGTTGAGCCATCTGACACTATTGACAACG-TGAA 470 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| || || | ||||| ||||| || || | || || Sbjct 469 GCAGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGG 410 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGC 38442 ||| ||||| || || | ||||| || ||||||||||| || ||||| ||| || | Sbjct 409 CAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGC-ACAC 351 Query 38443 TGCATTTGGTGCTGCGT 38459 |||| ||||||||||| Sbjct 350 TGCACCTGGTGCTGCGT 334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || ||||| |||||||| | || || ||| | | |||| | | |||| | || Sbjct 1011 CTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACG-TGAA 953 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || || | ||||| ||||| || || | ||||| ||||| || || | || || Sbjct 952 GCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGG 893 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGC 38442 ||| ||||| || || | ||||| || ||||| |||||||| ||||| ||| || | Sbjct 892 CAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATCCAGAAGGAGAGC-ACAC 834 Query 38443 TGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| ||||||||||| || | || ||| Sbjct 833 TGCACCTGGTGCTGCGTCTGCGTGGAGGC 805 >seq18313 Length=2265 Score = 102 bits (112), Expect = 8e-17 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | || || ||||| ||||| | ||| ||||| Sbjct 2240 AAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGCAGCGTCTCATCTTCGCTGGCAAG 2181 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCA 38446 ||||| || || | ||||| || | ||||||||||||||| ||||| ||| || ||||| Sbjct 2180 CAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGAGC-ACTCTGCA 2122 Query 38447 TTTGGTGCTGCGT 38459 ||||||||||| Sbjct 2121 CCTGGTGCTGCGT 2109 >seq18312 Length=2245 Score = 102 bits (112), Expect = 8e-17 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | || || ||||| ||||| | ||| ||||| Sbjct 2235 AAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGCAGCGTCTCATCTTCGCTGGCAAG 2176 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCA 38446 ||||| || || | ||||| || | ||||||||||||||| ||||| ||| || ||||| Sbjct 2175 CAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGAGC-ACTCTGCA 2117 Query 38447 TTTGGTGCTGCGT 38459 ||||||||||| Sbjct 2116 CCTGGTGCTGCGT 2104 >seq4375 Length=1004 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || || ||| | | Sbjct 222 ATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTGAGCCATCT 163 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| || || | ||||| Sbjct 162 GACACTATTGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 104 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| || || ||||| Sbjct 103 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGATTACAA 44 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTG 38462 |||||| ||||| ||| || ||||| ||||||||||| || Sbjct 43 CATCCAGAAGGAGAGC-ACTCTGCACCTGGTGCTGCGTCTG 4 >seq2369 Length=1144 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || ||||| |||||||| | || || ||| | | |||| | | |||| | || Sbjct 617 CTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCTGACACTATTGACAACG-TGAA 675 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || || | ||||| ||||| || || | ||||| ||||| || || | ||| || Sbjct 676 GCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTGG 735 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGC 38442 ||| ||||| || || | ||||| || ||||||||||| || ||||| ||| || | Sbjct 736 CAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGC-ACAC 794 Query 38443 TGCATTTGGTGCTGCGT 38459 |||| ||||||||||| Sbjct 795 TGCACCTGGTGCTGCGT 811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500037822117760