Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq20785 152 2e-31 seq18584 152 2e-31 seq17201 152 2e-31 seq17200 152 2e-31 seq1251 105 3e-17 seq2369 91.5 6e-13 >seq20785 Length=6495 Score = 152 bits (168), Expect = 2e-31 Identities = 244/352 (69%), Gaps = 9/352 (3%) Strand=Plus/Minus Query 451258 ATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTAC 451317 ||| || || |||||||| |||||||| ||||||||| | | ||| |||| Sbjct 5029 ATCCATTGTGCTTACTAAGATGAAAGAGACAGCAGAAGCTTTCTTAGGTAGGGGTGTTAG 4970 Query 451318 TGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 | | ||||| |||| || || ||||| ||||| ||| ||||| |||||||||| || || Sbjct 4969 TAAAGCAGTTGTTACAGTACCTGCTTACTTCAACGATTCACAAAGGCAAGCAACCAAGGA 4910 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || | || ||||| | |||| | || ||||| |||||||||||||| || || Sbjct 4909 TGCTGGCCGCATCGCTGGCCTTGATGTGCAGCGCATTATCAATGAACCTACAGCTGCAGC 4850 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGA 451497 || || ||||| || | | || |||| | || || ||||||||| Sbjct 4849 ACTTGCCTATGGCCTTG---------ACAAAGCAGATGGTAAGCTAATAGCAGTATTTGA 4799 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGT 451557 | ||||||| || || ||||| ||| |||| || | ||| || |||||||| Sbjct 4798 TCTTGGTGGCGGTACATTTGATATATCTATACTAGAGATCAGTGGTGGTGTGTTTGAAGT 4739 Query 451558 AAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 || || ||||| ||||| ||| ||||| |||||||| ||||| | ||| Sbjct 4738 GAAAGCTACCAACGGTGACACTATGCTAGGTGGTGAAGACTTTGATGAAGCA 4687 >seq18584 Length=6491 Score = 152 bits (168), Expect = 2e-31 Identities = 244/352 (69%), Gaps = 9/352 (3%) Strand=Plus/Plus Query 451258 ATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTAC 451317 ||| || || |||||||| |||||||| ||||||||| | | ||| |||| Sbjct 1463 ATCCATTGTGCTTACTAAGATGAAAGAGACAGCAGAAGCTTTCTTAGGTAGGGGTGTTAG 1522 Query 451318 TGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 | | ||||| |||| || || ||||| ||||| ||| ||||| |||||||||| || || Sbjct 1523 TAAAGCAGTTGTTACAGTACCTGCTTACTTCAACGATTCACAAAGGCAAGCAACCAAGGA 1582 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || | || ||||| | |||| | || ||||| |||||||||||||| || || Sbjct 1583 TGCTGGCCGCATCGCTGGCCTTGATGTGCAGCGCATTATCAATGAACCTACAGCTGCAGC 1642 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGA 451497 || || ||||| || | | || |||| | || || ||||||||| Sbjct 1643 ACTTGCCTATGGCCTTG---------ACAAAGCAGATGGTAAGCTAATAGCAGTATTTGA 1693 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGT 451557 | ||||||| || || ||||| ||| |||| || | ||| || |||||||| Sbjct 1694 TCTTGGTGGCGGTACATTTGATATATCTATACTAGAGATCAGTGGTGGTGTGTTTGAAGT 1753 Query 451558 AAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 || || ||||| ||||| ||| ||||| |||||||| ||||| | ||| Sbjct 1754 GAAAGCTACCAACGGTGACACTATGCTAGGTGGTGAAGACTTTGATGAAGCA 1805 >seq17201 Length=7759 Score = 152 bits (168), Expect = 2e-31 Identities = 244/352 (69%), Gaps = 9/352 (3%) Strand=Plus/Minus Query 451258 ATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTAC 451317 ||| || || |||||||| |||||||| ||||||||| | | ||| |||| Sbjct 7116 ATCCATTGTGCTTACTAAGATGAAAGAGACAGCAGAAGCTTTCTTAGGTAGGGGTGTTAG 7057 Query 451318 TGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 | | ||||| |||| || || ||||| ||||| ||| ||||| |||||||||| || || Sbjct 7056 TAAAGCAGTTGTTACAGTACCTGCTTACTTCAACGATTCACAAAGGCAAGCAACCAAGGA 6997 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || | || ||||| | |||| | || ||||| |||||||||||||| || || Sbjct 6996 TGCTGGCCGCATCGCTGGCCTTGATGTGCAGCGCATTATCAATGAACCTACAGCTGCAGC 6937 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGA 451497 || || ||||| || | | || |||| | || || ||||||||| Sbjct 6936 ACTTGCCTATGGCCTTG---------ACAAAGCAGATGGTAAGCTAATAGCAGTATTTGA 6886 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGT 451557 | ||||||| || || ||||| ||| |||| || | ||| || |||||||| Sbjct 6885 TCTTGGTGGCGGTACATTTGATATATCTATACTAGAGATCAGTGGTGGTGTGTTTGAAGT 6826 Query 451558 AAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 || || ||||| ||||| ||| ||||| |||||||| ||||| | ||| Sbjct 6825 GAAAGCTACCAACGGTGACACTATGCTAGGTGGTGAAGACTTTGATGAAGCA 6774 >seq17200 Length=7760 Score = 152 bits (168), Expect = 2e-31 Identities = 244/352 (69%), Gaps = 9/352 (3%) Strand=Plus/Minus Query 451258 ATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTAC 451317 ||| || || |||||||| |||||||| ||||||||| | | ||| |||| Sbjct 7117 ATCCATTGTGCTTACTAAGATGAAAGAGACAGCAGAAGCTTTCTTAGGTAGGGGTGTTAG 7058 Query 451318 TGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 | | ||||| |||| || || ||||| ||||| ||| ||||| |||||||||| || || Sbjct 7057 TAAAGCAGTTGTTACAGTACCTGCTTACTTCAACGATTCACAAAGGCAAGCAACCAAGGA 6998 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || | || ||||| | |||| | || ||||| |||||||||||||| || || Sbjct 6997 TGCTGGCCGCATCGCTGGCCTTGATGTGCAGCGCATTATCAATGAACCTACAGCTGCAGC 6938 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGA 451497 || || ||||| || | | || |||| | || || ||||||||| Sbjct 6937 ACTTGCCTATGGCCTTG---------ACAAAGCAGATGGTAAGCTAATAGCAGTATTTGA 6887 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGT 451557 | ||||||| || || ||||| ||| |||| || | ||| || |||||||| Sbjct 6886 TCTTGGTGGCGGTACATTTGATATATCTATACTAGAGATCAGTGGTGGTGTGTTTGAAGT 6827 Query 451558 AAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 || || ||||| ||||| ||| ||||| |||||||| ||||| | ||| Sbjct 6826 GAAAGCTACCAACGGTGACACTATGCTAGGTGGTGAAGACTTTGATGAAGCA 6775 >seq1251 Length=1604 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || |||||||| || ||||| || |||||||||||||| ||||| Sbjct 1498 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATCT 1439 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || ||||| || ||||| || || || ||||| || Sbjct 1438 GACACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 1379 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || ||||| ||||| | ||| || | ||||| || Sbjct 1378 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAAC 1319 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 1318 ATCCAGAAGGA 1308 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 |||||||| || || || |||||||||||||| ||||||| | ||||| | || Sbjct 1011 CTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGAAG 952 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||| || ||||| || || || ||||| || || ||| | || || | || Sbjct 951 CAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGC 892 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || || ||||| ||||| | ||| || | || ||||| || | ||||| ||||| Sbjct 891 AAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATCCAGAAGGAGAGCACACTG 832 Query 391251 CAC 391253 ||| Sbjct 831 CAC 829 >seq2369 Length=1144 Score = 91.5 bits (100), Expect = 6e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 |||||||| || || || |||||||||||||| ||||||| | ||||| | || Sbjct 151 CTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGAAG 210 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || || || || ||||| || || || ||||| || || ||| | || || | || Sbjct 211 CAGAAGATNCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGC 270 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 || || ||||| ||||| | ||| || | || ||||| ||| | ||||| Sbjct 271 AAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATTCAGAAGGA 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975171898385612