Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq20785 107 1e-17 seq18584 107 1e-17 seq17201 107 1e-17 seq17200 107 1e-17 >seq20785 Length=6495 Score = 107 bits (118), Expect = 1e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 ||| ||||| ||||| |||| || ||||| || |||||||| ||||| | | |||| Sbjct 4828 TTTGTCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTCATTGATAATGCGCTGCACATC 4887 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||| ||||| || | || ||||| || || ||||| |||||||||||||| || || || Sbjct 4888 AAGGCCAGCGATGCGGCCAGCATCCTTGGTTGCTTGCCTTTGTGAATCGTTGAAGTAAGC 4947 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 ||| || |||| ||| || | | | || | |||| | |||| ||| || | ||| Sbjct 4948 AGGTACTGTAACAACTGCTTTACTAACACCCCTACCTAAGAAAGCTTCTGCTGTCTCTTT 5007 Query 518347 CATTTTA 518353 ||| ||| Sbjct 5008 CATCTTA 5014 >seq18584 Length=6491 Score = 107 bits (118), Expect = 1e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 ||| ||||| ||||| |||| || ||||| || |||||||| ||||| | | |||| Sbjct 1664 TTTGTCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTCATTGATAATGCGCTGCACATC 1605 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||| ||||| || | || ||||| || || ||||| |||||||||||||| || || || Sbjct 1604 AAGGCCAGCGATGCGGCCAGCATCCTTGGTTGCTTGCCTTTGTGAATCGTTGAAGTAAGC 1545 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 ||| || |||| ||| || | | | || | |||| | |||| ||| || | ||| Sbjct 1544 AGGTACTGTAACAACTGCTTTACTAACACCCCTACCTAAGAAAGCTTCTGCTGTCTCTTT 1485 Query 518347 CATTTTA 518353 ||| ||| Sbjct 1484 CATCTTA 1478 >seq17201 Length=7759 Score = 107 bits (118), Expect = 1e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 ||| ||||| ||||| |||| || ||||| || |||||||| ||||| | | |||| Sbjct 6915 TTTGTCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTCATTGATAATGCGCTGCACATC 6974 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||| ||||| || | || ||||| || || ||||| |||||||||||||| || || || Sbjct 6975 AAGGCCAGCGATGCGGCCAGCATCCTTGGTTGCTTGCCTTTGTGAATCGTTGAAGTAAGC 7034 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 ||| || |||| ||| || | | | || | |||| | |||| ||| || | ||| Sbjct 7035 AGGTACTGTAACAACTGCTTTACTAACACCCCTACCTAAGAAAGCTTCTGCTGTCTCTTT 7094 Query 518347 CATTTTA 518353 ||| ||| Sbjct 7095 CATCTTA 7101 >seq17200 Length=7760 Score = 107 bits (118), Expect = 1e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 ||| ||||| ||||| |||| || ||||| || |||||||| ||||| | | |||| Sbjct 6916 TTTGTCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTCATTGATAATGCGCTGCACATC 6975 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||| ||||| || | || ||||| || || ||||| |||||||||||||| || || || Sbjct 6976 AAGGCCAGCGATGCGGCCAGCATCCTTGGTTGCTTGCCTTTGTGAATCGTTGAAGTAAGC 7035 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 ||| || |||| ||| || | | | || | |||| | |||| ||| || | ||| Sbjct 7036 AGGTACTGTAACAACTGCTTTACTAACACCCCTACCTAAGAAAGCTTCTGCTGTCTCTTT 7095 Query 518347 CATTTTA 518353 ||| ||| Sbjct 7096 CATCTTA 7102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779751082705834