Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq20785 86.0 8e-12 seq18584 86.0 8e-12 seq17201 86.0 8e-12 seq17200 86.0 8e-12 >seq20785 Length=6495 Score = 86.0 bits (94), Expect = 8e-12 Identities = 229/345 (66%), Gaps = 10/345 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || ||||||||||| | || || || ||| ||||| |||||||| | ||| Sbjct 4693 ATCAAAGTCTTCACCACCTAGCATAGTGTCACCGTTGGTAGCTTTCACTTCAAACACACC 4752 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | || | || | |||||| ||||| ||||| || ||||| | || Sbjct 4753 ACCACTGATCTCTAGTATAGATATATCAAATGTACCGCCACCAAGATCAAATACTGCTAT 4812 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || | || ||||| || || || || || | || || || || ||||| Sbjct 4813 TAGCTTACCATCTGCTTTG------TCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTC 4866 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 ||| ||||| || | ||| | |||||||| || | ||| ||||| || || ||||| Sbjct 4867 ATTGATAATGCGCTGCACA-TCAAGGCCAGCGAT-GCGGCCAGCATCCTTGGTTGCTTGC 4924 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | ||| |||||||| ||||| || || || || || || || | | || | |||| Sbjct 4925 CTTTGTGAATCGTTGAAGTAAGCAGGTACTGTAACAACTGCTTTACTAACACCCCTACCT 4984 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGAT 7798 | | | ||| || | |||||||| || ||||| || || ||| Sbjct 4985 AAGAAAGCTTCTGCTGTCTCTTTCATCTTAGTAAGCACAATGGAT 5029 >seq18584 Length=6491 Score = 86.0 bits (94), Expect = 8e-12 Identities = 229/345 (66%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || ||||||||||| | || || || ||| ||||| |||||||| | ||| Sbjct 1799 ATCAAAGTCTTCACCACCTAGCATAGTGTCACCGTTGGTAGCTTTCACTTCAAACACACC 1740 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | || | || | |||||| ||||| ||||| || ||||| | || Sbjct 1739 ACCACTGATCTCTAGTATAGATATATCAAATGTACCGCCACCAAGATCAAATACTGCTAT 1680 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || | || ||||| || || || || || | || || || || ||||| Sbjct 1679 TAGCTTACCATCTGCTTTG------TCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTC 1626 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 ||| ||||| || | ||| | |||||||| || | ||| ||||| || || ||||| Sbjct 1625 ATTGATAATGCGCTGCACA-TCAAGGCCAGCGAT-GCGGCCAGCATCCTTGGTTGCTTGC 1568 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | ||| |||||||| ||||| || || || || || || || | | || | |||| Sbjct 1567 CTTTGTGAATCGTTGAAGTAAGCAGGTACTGTAACAACTGCTTTACTAACACCCCTACCT 1508 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGAT 7798 | | | ||| || | |||||||| || ||||| || || ||| Sbjct 1507 AAGAAAGCTTCTGCTGTCTCTTTCATCTTAGTAAGCACAATGGAT 1463 >seq17201 Length=7759 Score = 86.0 bits (94), Expect = 8e-12 Identities = 229/345 (66%), Gaps = 10/345 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || ||||||||||| | || || || ||| ||||| |||||||| | ||| Sbjct 6780 ATCAAAGTCTTCACCACCTAGCATAGTGTCACCGTTGGTAGCTTTCACTTCAAACACACC 6839 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | || | || | |||||| ||||| ||||| || ||||| | || Sbjct 6840 ACCACTGATCTCTAGTATAGATATATCAAATGTACCGCCACCAAGATCAAATACTGCTAT 6899 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || | || ||||| || || || || || | || || || || ||||| Sbjct 6900 TAGCTTACCATCTGCTTTG------TCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTC 6953 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 ||| ||||| || | ||| | |||||||| || | ||| ||||| || || ||||| Sbjct 6954 ATTGATAATGCGCTGCACA-TCAAGGCCAGCGAT-GCGGCCAGCATCCTTGGTTGCTTGC 7011 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | ||| |||||||| ||||| || || || || || || || | | || | |||| Sbjct 7012 CTTTGTGAATCGTTGAAGTAAGCAGGTACTGTAACAACTGCTTTACTAACACCCCTACCT 7071 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGAT 7798 | | | ||| || | |||||||| || ||||| || || ||| Sbjct 7072 AAGAAAGCTTCTGCTGTCTCTTTCATCTTAGTAAGCACAATGGAT 7116 >seq17200 Length=7760 Score = 86.0 bits (94), Expect = 8e-12 Identities = 229/345 (66%), Gaps = 10/345 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || ||||||||||| | || || || ||| ||||| |||||||| | ||| Sbjct 6781 ATCAAAGTCTTCACCACCTAGCATAGTGTCACCGTTGGTAGCTTTCACTTCAAACACACC 6840 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | || | || | |||||| ||||| ||||| || ||||| | || Sbjct 6841 ACCACTGATCTCTAGTATAGATATATCAAATGTACCGCCACCAAGATCAAATACTGCTAT 6900 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || | || ||||| || || || || || | || || || || ||||| Sbjct 6901 TAGCTTACCATCTGCTTTG------TCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTC 6954 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 ||| ||||| || | ||| | |||||||| || | ||| ||||| || || ||||| Sbjct 6955 ATTGATAATGCGCTGCACA-TCAAGGCCAGCGAT-GCGGCCAGCATCCTTGGTTGCTTGC 7012 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | ||| |||||||| ||||| || || || || || || || | | || | |||| Sbjct 7013 CTTTGTGAATCGTTGAAGTAAGCAGGTACTGTAACAACTGCTTTACTAACACCCCTACCT 7072 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGAT 7798 | | | ||| || | |||||||| || ||||| || || ||| Sbjct 7073 AAGAAAGCTTCTGCTGTCTCTTTCATCTTAGTAAGCACAATGGAT 7117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634961401474760